BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57400.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917448 jgi|Araly1|917448|Al_scaffold_0008_2199 852 0.0
> Ahg917448 jgi|Araly1|917448|Al_scaffold_0008_2199
Length=609
Score = 852 bits (461), Expect = 0.0
Identities = 550/593 (93%), Gaps = 5/593 (1%)
Strand=Plus/Plus
Query 180 ATGAATCAAGAATACGATAACATAACTCCAATACCAAAAGCTTCATTATTGTTAATGGAG 239
|||||||||||| || ||| || ||||||||||||||||||||||||||||||| | |||
Sbjct 1 ATGAATCAAGAACACAATACCACAACTCCAATACCAAAAGCTTCATTATTGTTACTAGAG 60
Query 240 AATGATCTATGCAAGAGAGAATCAGAGATCTCAAGAAGCTCATCGGTGGGAGTTTCTTCT 299
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GATGATCTATGCAAGAGAGAATCAGAGATCTCAAGAAACTCATCGGTGGGAGTTTCTTCT 120
Query 300 AGATTGTTCTATTACTATCATCATCGTAGTCTCAATGAAGGAGTTCCTTTTAAGTGGGAG 359
||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 121 AGATTGTTCTATTACTACCATCATCGAAGTTTCAACGAAGGAGTTCCTTTTAAGTGGGAG 180
Query 360 ATGCAGCCGGGAACACCGATCAACCCTCCGCCGGAAGAAAACGTTCGTCCGATTACTCCT 419
||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||
Sbjct 181 ATGCAGCCGGGAACACCGATCAATCCTCCGCCGGAAGAAATCATTCGTCCGATTACACCT 240
Query 420 CCTCCGGCGTTTCTCAGCCTTGGTTTCCCTGAACCCTCAGTCTCAGTCGTCGGAAATTCT 479
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 241 CCTCCGGCGTTTCTCAGCCTTGGTTTCCCTAAACCCTCAATCTCAGTCGTCGGAGGTTCT 300
Query 480 AATAAACATTCTCTATTTCC-GGCGAATATTAAGCTTTGGAGATGGAAGAATCTTCGAAA 538
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 301 AATAAACATTCTCT-TTTCCCGGCGAATCTTAAGCTTTGGAGATGGAAGAATCTGCGTAA 359
Query 539 GAGATATTTCTCTAGATGGTCGAGCCAAAGCATGCTTAATAAAGATAATAATAATGCTCG 598
||||||| ||||||||||||| |||||||||||||||||||||||| || ||| | ||||
Sbjct 360 GAGATATCTCTCTAGATGGTCAAGCCAAAGCATGCTTAATAAAGATTATCATATTTCTCG 419
Query 599 TGACGGTAATTCAAATTCTTGTGATGACTTGGAGAGATTCGAGGGGTTTAATGACTACAG 658
||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||
Sbjct 420 TGACGGTAATTCAAATTCTTGTGATGAATTGGAGAGATTCGAGGAGTTTAAGGATTACAG 479
Query 659 GTCGAGCTCATCTTCTTCTTCGTCGTC-T-T-CCTCGAAAGATCGGAGATTGATAAAGGC 715
||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 480 GTCGAGCTCATGTTCTTCTTCGTCGTCGTCTTCCTCGAAAGATCGGAGATTGATAAAGGC 539
Query 716 GTCACCACGGCAATGGTTTAGGGGTTCTCCATCTCGGAATTCAAGAAACAATC 768
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 540 TTCACCACGTCAATGGTTTAGCGGTTGTCCATCTCGGAATTCAAGAAACAATC 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5