BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57410.3
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495841 jgi|Araly1|495841|fgenesh2_kg.8__1657__AT5G57410.1 2069 0.0
> Ahg495841 jgi|Araly1|495841|fgenesh2_kg.8__1657__AT5G57410.1
Length=1592
Score = 2069 bits (1120), Expect = 0.0
Identities = 1288/1364 (94%), Gaps = 31/1364 (2%)
Strand=Plus/Plus
Query 13 GATTATTATTACTGAAATAAAAAGCAAAGTG-----AAA-A-AGGTTTTAAAAACTTTTA 65
||||||||| ||||||||||||||||||||| ||| | ||||||| ||||| ||||
Sbjct 1 GATTATTATGACTGAAATAAAAAGCAAAGTGAAAAAAAATAGAGGTTTT-AAAAC-TTTA 58
Query 66 TTTTCGCTCTTCTCCAGAAACATTCCGTTTCAGATAtttttgatttttgaatttgttttC 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTTTCGCTCTTCTCTAGAAACATTCCGTTTCAGATATTTTTGATTTTTGAATTTGTTTTC 118
Query 126 GctctctctctctctctGCTTAGA-TTAGATCTGTTCCTGTGAATTGATTCTCTGTTTC- 183
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 119 G----CTCTCTCTCTCTGCTTAGATTTAGATCTGTTCCTGTGAATTGATTCTCTG-TTCA 173
Query 184 ATCGT-TTGCTCACGCCGCCGTTTTCGCCGGAGGTGGAAG--C-TCTCATCGCCGTTTCG 239
||||| || ||||||||| || ||||||||||| ||||| | || ||||| |||||||
Sbjct 174 ATCGTGTTTCTCACGCCGTCGGTTTCGCCGGAGAAGGAAGTTCTTCACATCGTCGTTTCG 233
Query 240 AAAATGCCGGCGAATGATGCTGAATACGATCTCAAAGTTTTATCTCAATCTGCGTCAGCA 299
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 234 AAAATGCCGGCGAATGATGCTGAGTACGATCTCAAAGTTTTATCTCAATCTGCG--A-CG 290
Query 300 GGGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAG 359
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 291 GGGGATTACACATTCGCGAATGTGGATAATTTGGAGCATTGTACGAAGTATTTGAATCAG 350
Query 360 ACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTGTTTCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 351 ACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCGGTTTCT 410
Query 420 ATATCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGACAACGTGATATAGAG 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATCTCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGACAACGTGATATAGAG 470
Query 480 TTTAGAGAATCTGCTAATGAGCTGAGACAGAGACAGCAATCGGATATAGCTAGACTTGAA 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 TTTAGAGAATCTGCTAATGAGCTGAGACAGAGACAACAATCGGATATAGCTAGACTTGAA 530
Query 540 GCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGAGAAATTGCAACAATT 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 531 GCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGGGAAATTGCAACAATT 590
Query 600 ACCAGAACCGAAGCCAAAAACACTGCAGCTTTGAAGTCTCAGATTGAAAAGTTACAGCAG 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACCAGAACCGAAGCCAAAAACGCTGCAGCTTTGAAGTCTCAGATTGAAAAGTTACAGCAG 650
Query 660 GAGAGGGATGAATTCCAAAGGATGGTGATTGGTAACCAGCAAGTGAAGGCTCAACAGATA 719
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 651 GAGAGGGATGAATTCCAAAGAATGGTGATTGGTAACCAGCAAGTCAAGGCTCAACAGATA 710
Query 720 CACGAAATGAAGAAAAAGGAGAAGGATTACATTAAGTTGCAGGAACGGCTGAATCAAGTG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CACGAAATGAAGAAAAAGGAGAAGGATTACATTAAGTTGCAGGAACGGCTGAATCAAGTA 770
Query 780 TTAATGGAGAAAAAGAAAGAATCAAGATCTGGAATGGAGATTATGAATTTGCTACAGAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 771 TTAATGGAGAAAAAGAAAGAATCAAGATCTGGAATGGAGATTATGAATTTGTTACAGAAA 830
Query 840 GAAGGGAGGCAACGTGGTACCTGGAATGGCAAGAAGACTGATACCGACTTCTATAAAAAG 899
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 831 GAAGGGAGGCAACGTGGTACCTGGAATGGCAAGAAGACTGATACTGACTTCTACAAAAAG 890
Query 900 ATAGTGGATGCGTACGAAGCGAAAAATCAAGAATTGATGGCTGAGAACACTAGTCTAAGA 959
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 891 ATAGTGGATGCGTATGAAGCGAAAAATCAAGAATTGATGGCTGAGAACACTAATCTTAGA 950
Query 960 GCATTACTTCGATCCATGCAGACAGATATGCGTGATTTCTTAAATGCTCCAAATGGGTCA 1019
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 951 GGATTACTTCGATCCATGCAGACAGATATGCGCGATTTCTTAAATGCTCCAAATGGGTCA 1010
Query 1020 GCTA--C----ATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTG 1073
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GCTAATCCTTCATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTG 1070
Query 1074 GGTGGGAAGACGGACGTGTTTGATCTACCTTACCGGATGGCTAGAGGTCAAATAGAAGAA 1133
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGTGGGAAGACGGACGTATTTGACCTACCTTACCGGATGGCTAGAGGTCAAATAGAAGAA 1130
Query 1134 AGTTTGCGTACTAAGATGGCTTCCATAAAGGAAAGCATGGTCCAGTTACAAGATGCACCT 1193
|||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 1131 AGTTTGCGCACTAAGATGGCTTCCATTAAGGAACGCATGGTTCAGTTACAAGATGCACCT 1190
Query 1194 AAAAGAGCATCTGTTACATCTGAAGCAACAGAGAGAGAGCTTGAACTCGAAGCTCAGCTT 1253
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AAAGGAGCATCTGTTACATCTGAAGCAACAGAGAGAGAGCTTGAACTCGAAGCTCAGCTC 1250
Query 1254 GTCGAGGCAAGAAGCATAATCCAAGAACAGGAGTCCATAATGTCGAAACATCTCCCAAAA 1313
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1251 GTGGAGGCAAGAAGCATAATCCAAGAACAGGAGTCAATAATGTCGAAACATCTCCCAAAA 1310
Query 1314 TCAGAGCAGCGAAGGGAATCTGTAGCTTCG-TTGGCAGCTGAGG 1356
|||||| |||||||||| || |||| ||| |||||||| ||||
Sbjct 1311 TCAGAGAAGCGAAGGGATTCGGTAG-TTCCATTGGCAGCCGAGG 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5