BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57420.1

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332040 jgi|Araly1|332040|fgenesh1_pm.C_scaffold_8001383           787    0.0  


> Ahg332040 jgi|Araly1|332040|fgenesh1_pm.C_scaffold_8001383
Length=516

 Score =  787 bits (426),  Expect = 0.0
 Identities = 486/516 (94%), Gaps = 0/516 (0%)
 Strand=Plus/Plus

Query  1    ATGAATAGTTTCGAGCCACAAAGCCAAGACTCTTTGCAAAGAAGGTTTCATCAAGACAAC  60
            ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGAACAGTTTCGAGCCACAAACCCAAGACTCATTGCAAAGAAGGTTTCATCAAGACAAC  60

Query  61   AGCACCACACAACAACCTCGTGACACCACGACACCTTTCATACCCAAACCGGCTTCCAAA  120
            | |||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  61   ACCACCACGCATCAACCTCGTGACACCACGACACCTTTCATATCCAAACCGGCTTCGAAA  120

Query  121  AACCATAATAATAGCAACTCCAGCTCTGGAGCGGCCGGGAGATCATTCCAAGGCTTTGGG  180
            |||||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||||| 
Sbjct  121  AACCATAACAATAGCAACTCCAGCTCCGAAGCGGCCGGTAGATCATTCCAAGGGTTTGGC  180

Query  181  CTTAACGTAGAGGACGATCTTGTTTCATCGGTGGTTCCTCCGGTTACGGTTGTGCTAGAG  240
            |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  181  CTTAACGTGGAGGACGATCTAGTTTCATCGGTGGTTCCTCCGGTTACGGTTGTGCTCGAG  240

Query  241  GGACGTTCTATATGTCAACGCATAAGCCTAGACAAGCATGGGAGTTATCAGAGCTTGGCT  300
            |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGACGTTCGATTTGCCAACGCATAAGCCTAGACAAGCATGGGAGTTATCAGAGCTTGGCT  300

Query  301  TCGGCTCTAAGGCAAATGTTTGTCGATGGAGCTGATTCAACGGACGATCTTGATCTGTCA  360
            | ||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct  301  TTGGCTCTAAGACAAATGTTTGTCGATGGGGCTGATTCGACAGACGATCTTGATCTGTCA  360

Query  361  AACGCCATTCCTGGCCATCTTATTGCTTATGAAGACATGGAGAACGATCTCCTTCTTGCC  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AACGCCATTCCTGGCCATCTTATTGCTTATGAAGACATGGAGAACGATCTCCTTCTTGCC  420

Query  421  GGAGATCTTACTTGGAAGGACTTTGTTCGTGTAGCGAAGAGAATTCGAATCTTGCCGGTC  480
            || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  421  GGCGATCTTACATGGAAGGACTTTGTTCGTGTAGCAAAGAGAATTCGAATCTTGCCGGTC  480

Query  481  AAGGGAAACACAAGACAAGTTAAAAGAAACGAGTGA  516
            ||||||||||||||| |||| |||||||||||||||
Sbjct  481  AAGGGAAACACAAGAAAAGTGAAAAGAAACGAGTGA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19955373047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5