BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57460.1
Length=2320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495846 jgi|Araly1|495846|fgenesh2_kg.8__1662__AT5G57460.1 3507 0.0
> Ahg495846 jgi|Araly1|495846|fgenesh2_kg.8__1662__AT5G57460.1
Length=2234
Score = 3507 bits (1899), Expect = 0.0
Identities = 2101/2197 (96%), Gaps = 19/2197 (1%)
Strand=Plus/Plus
Query 94 CATTGAGATTGAATAGTCACCATTAGTAGAAGCTTCGAGATCAATTTCGAATCGGGATCA 153
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 54 CATTGAGATTGAATAGTCGCAATTAGTAGAAGCTTCGAGATCAATTTCGAATCGCGATCA 113
Query 154 TGTCGTGTTTAGCCCTAGCTCTGCAACCAGCAAATGGATCCGACATTTTGCTCCAAACTA 213
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 114 TGTCGTGTTTAGCCCTAGCTCTGCAACCAGCAAATGGATCCGACATTTTGCTTCAAACTA 173
Query 214 GAGAATGGTTTCCACCAGCAAGAGCCTTAATCGCTCTCTCGTATTTTCGTCAAATGCGTC 273
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 174 GAGAATGGTTTCCACCAGCAAGAGCCCTAATCGCTCTCTCGTATTTTCGTCAAATGCGTC 233
Query 274 AAGCATTAGCGTCCTCGAAGCAGCAGCATCAGCAACAATCGAATCAGAAACAGAATCAAG 333
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 AAGCATTAGCTTCCTCGAAGCAACAGCATCAGCAACAATCGAATCAGAAACAGAATCAAG 293
Query 334 cttcttcttcttcttcttcttcttcCTCCGTTGCGGATCCTGACGATGCCACGGCGGCGG 393
|||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 294 ------------CTTCTTCTTCTTCCTCCGTTGCGGATCCCGACGACGCCACGGCGGCGG 341
Query 394 AGTTTGTAGGTGATGATCCACTCGCTGCTTCTAATGGACAGGTTATTGTTGGTGTTGAGA 453
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 342 AATTTGTAGGTGATGATCCACTTGCTGCTTCTAATGGACAGGTTATTGTTGGTGTTGAGA 401
Query 454 GCAAGTATCGTGTAGTTTATAGATTAGTGAACTCGATCTATATCCTTGGTGTTACTGTCG 513
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GCAAGTATCGTGTGGTTTATAGATTAGTGAACTCGATCTATATCCTTGGTGTTACTGTCG 461
Query 514 CGGATCATGATAATTCGATCAATGTATTTGAGTGTATTCATATTGTGAATCAAGCTGTTA 573
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 462 CGGATCATGATAATTCGATTAATGTGTTTGAGTGTATTCATATTGTGAATCAAGCTGTTA 521
Query 574 GTGTTATTGTTACTGCTTGTCGTGGAGTTGAAGTTACTCCGGAGAAGCTTGGACGGAAGT 633
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 522 GTGTTATTGTTACTGCTTGTCGTGGAGTTGAAGTGACTCCGGAGAAGCTTGGACGGAAGT 581
Query 634 ATGCTGAGGTTTATATGGCGCTTGATATTGTTTTGCGTGGTGTTAGTAATATCCGTCTTG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATGCTGAGGTTTATATGGCGCTTGATATTGTTTTGCGTGGTGTTAGTAATATCCGTCTTG 641
Query 694 CGGCGATGCTTGGTGCTATGCACGGAGATGGGATTGCGAAGATGGTTCATTCGGCTCTTG 753
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 642 CCGCGATGCTTGGTGCTATGCACGGGGATGGGATTGCGAAGATGGTTCATTCGGCTCTTG 701
Query 754 ATACTGAGAATAAGATCCGAGGAGCTGATAGTTGGATGGCTGTTGAATCGCATGCGGCAG 813
||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||
Sbjct 702 ATACTGAGAATAAGATCCGTGGAGCAGATAGTTGGATGGCTGTGGAATCGCACGCCGCAG 761
Query 814 AGCATCAAGCTTCTGTAAACGCATTTTCTAATGCAAGATTTGAATTGCCTCCGGAGACTG 873
|||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||
Sbjct 762 AGCATCAAGCTTCTGTGCACGCATTCTCAAATGCAAGATTTGAATTGCCTCTGGAGACTA 821
Query 874 T-TGCCGCTGGAGATGAGTTCGCGGCGAGCTTGGCTCCAGTGGTGCCTGAATCAGAGCAA 932
| | | ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 822 TCT-CTGCTGGAGATGAATTTGCGGCGAGCTTGGCTCCAGTGGTGCCTGAATCAGAGCAA 880
Query 933 TTGAAGGAAGAACCAGAGCCGGAGAATAAGGATCCTTTTGCGGCTAGTGAAACGATTAAC 992
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 881 TTGAAGGAAGAACCAGAGCCGGAGAATCAGGATCCTTTTGCAGCTAGTGAAACGATTAAC 940
Query 993 AAGGAGAAAGAACTTGTGGGTGGATTCAAGAAGACTAAGGATCCGTCCTCAACGGATTTG 1052
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 941 AAGGAGAAAGAACTTGTGGGTGGATTTAAGAAGACCAAGGATCCGTCCTCAACGGACTTG 1000
Query 1053 ACTTTGGCATTGGCTGGACTTGAAGTGACGACATTACCTCCAGCCGAGGCAACACAGTCT 1112
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1001 ACTTTGGCATTGGCTGGACTTGAAGTGACGACATTGCCTCCAGCTGAAGCAACACAGTCT 1060
Query 1113 ACGCACATCAATGTGGAAGGATTCGAAGGGCAGTATGGTGGGATTGAGTTCAGCAATGAA 1172
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1061 ACGCACATCAATGTGGAAGGATTCGAAGGGCAATACGGTGGGATTGAGTTCAGCAATGAA 1120
Query 1173 CAGGCTACGATTGGAGAAACTTTTGAATCGTTTAGTGATGCTTGGGGAGGTGGGTTGGAT 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CAGGCTACGATTGGAGAAACTTTTGAATCGTTTAGTGATGCTTGGGGAGGTGGGTTGGAT 1180
Query 1233 CCTTCAGAGTTTATGGGACCAAAGAAGATTCAGAAGAAGGAAGGACTCGGTGGGCTTGAG 1292
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1181 CCTTCAGAGTTTATGGGACCAAAGAAGATTCAAAAGAAGGAAGGACTCGGTGGGCTTGAG 1240
Query 1293 CTGTTGCACACCAGTGATCCGAAAGCAGTGGAAGGCAAAGATGGAGTTAATATCGATAAC 1352
||| ||||||||||||| || || |||||||||||||||||||||| |||| ||||||||
Sbjct 1241 CTGCTGCACACCAGTGACCCTAAGGCAGTGGAAGGCAAAGATGGAGGTAATCTCGATAAC 1300
Query 1353 CTAGTTAAGAAGCCTGAGATGAAAGGTCCTGAAATGTATATCTCTGAGGAAATTAGAACC 1412
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TTAGTTAAAAAGCCTGAGATGAAAGGTCCTGAAATGTATATCTCTGAGGAAATTAGAACC 1360
Query 1413 GAGTTTAGAGAATCCTTGCTTGCTAGAGTAGGAGTAATGGGTGTGATCTATCTGAAAACG 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GAGTTTAGAGAATCCTTGCTTGCTAGAGTAGGAGTAATGGGTGTGATCTATCTGAAAACG 1420
Query 1473 ATGCCACCCAAAGGCTCTGGTGAAGAGAAAGAAACTGAGTTCTCATTCCGTGTTGAGGGT 1532
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1421 ATGCCACCCAAAGGCTCTGGTGAAGAGAAAGAAACCGAGTTCTCATTCCGTGTTGAGGGT 1480
Query 1533 ACTACTGCAGTTAAGAGATTTGCTATGCAGAGTTCTCGGATCAGTAGCTTAGGGAACGGT 1592
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1481 ACTACTGCAGTTAAGAGATTCGCTATGCAGAGTTCTCGGATCAGTAGCTTAGGGAATGGT 1540
Query 1593 TTGTTTCACGTGAGAACTGCTCCATCAGAAGAACCAATCCCTATCCTTAAATATAGCTTG 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TTGTTTCACGTGAGAACTGCTCCATCAGAAGAACCAATCCCTATCCTTAAATATAGCTTG 1600
Query 1653 CAACCTAAACTAACCCCGTTGCCTCTTAGAGTCCGAATGGTGAAACGAATCAGCGGGACT 1712
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1601 CAACCTAAACTAACCCCATTGCCTCTTAGAGTCCGAATGGTGAAACGAACCAGCGGGACT 1660
Query 1713 TTACTCTCACTTATGATACAATACGTCTCAAATCCGGATCTACCTCAGCCTCTGAAAAAC 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TTACTCTCACTTATGATACAATACGTCTCAAATCCGGATCTACCTCAGCCTCTGAAAAAC 1720
Query 1773 GTCGACTTTATCCTAAAACTCCCGGTTGATCCCACATTGCTTAAGGTTTCGCCTAAAGCA 1832
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1721 GTCGACTTTATCCTGAAACTCCCGGTTGATCCCACATTGCTCAAGGTTTCGCCTAAAGCA 1780
Query 1833 ATACTGAACAGAACCGATCGAGAACTGAAATGGCAAATTCCGGAGATTCCTCTGAATGGA 1892
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1781 ATACTAAACAGAACCGATCAAGAACTGAAATGGCAAATTCCGGAGATTCCTCTGAAAGGA 1840
Query 1893 AGTCCCGGGAGACTAAGAGCACGGATGCCTATCGATTCAGATAACAGCGAGGAAGAACCA 1952
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1841 AGTCCCGGGAGACTAAGAGCACGGATGCCTATTGATTCAGATAACAGCGAGGAAGAACCA 1900
Query 1953 GATATCATCTGCTATGTGAAATTCTCGGTACAGGGAAATACTTCTCTGTCTGGTATCAGT 2012
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1901 GAAATCATCTGCTATGTGAAATTCTCGGTTCAGGGAAATACTTCTTTGTCTGGTATCAGT 1960
Query 2013 CTACGTGCAGCTGCTGAGGGAAATACAGATTTCTTTGAGGTAGATCACAGGTACGAAACC 2072
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1961 CTACGTGCAGCTGCTGAGGGAAATACAGATTTCTATGAGGTAGATCACAGGTACGAAACC 2020
Query 2073 GGAGTCTATATGTGCAATTGATAAAAGTTTCTCTCTAAAAGATTTACATTGTTTATAATT 2132
|||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |
Sbjct 2021 GGAGTCTATATGTGCAATTGATTAA-GTTTCTCTTTAAAAGATTTAAATTGTTTATAAAT 2079
Query 2133 TTCTCTAATGTTCTT-GAGTTTGGCCTTTGTTGAGAGTTA-TTCttttttttGGTATGTG 2190
|||||||||||| || |||||||||||||||||||||||| |||| ||||| | | ||||
Sbjct 2080 TTCTCTAATGTT-TTCGAGTTTGGCCTTTGTTGAGAGTTAATTCTATTTTT-GATTTGTG 2137
Query 2191 TCATGTAAGGTTTTGTGTACTTGTGTATCTTGACCTCTCTTCATTGTTATGTTATCTGTT 2250
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2138 TCATGTAAGGTTTTGTGTACTTGTGTATTTTGACATCTCTTCATTGTTATGTTATCTGTT 2197
Query 2251 TTACTCGATTTGCTTTTACATTTTTATATTATTGAAA 2287
||||||||||| |||| |||||||| |||||||||||
Sbjct 2198 TTACTCGATTTTCTTTCACATTTTTTTATTATTGAAA 2234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87379022030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5