BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57480.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950433 jgi|Araly1|950433|scaffold_802320.1 494 1e-138
> Ahg950433 jgi|Araly1|950433|scaffold_802320.1
Length=334
Score = 494 bits (267), Expect = 1e-138
Identities = 298/313 (95%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 1250 ACGGCGACGTTTTGAAGGAGATGGAGATG-GTTGTGGAGAAGGCTGAGATGACTCCTGCT 1308
||| ||||||||| ||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct 1 ACGACGACGTTTTAAAGGAGATGGAGA-GAGTGGTGGAGAAGGCTGAGATGACGCCTGCT 59
Query 1309 GATGTAAGTGAGGCTTTGATTAAGAATAGGAGGGATAAAGAGAAGGCGATTAGGGAGTTG 1368
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATGTAAGCGAGGCTTTGATTAAGAATAGGAGGGATAAAGAGAAGGCGATTAGGGAGTTG 119
Query 1369 TTGGAGGATTTAAAAAGTAGAGGGGAGAGAAATGTGAAAGATGGGAAATTGAGGGGTGGA 1428
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTGGAGGATTTGAAAAGTAGAGGGGAGAGAAATGTGAAAGATGGGAAATTGAGGGGTGGA 179
Query 1429 AGTGGGAATTTGACTGAATTGGAAGTTGTTGAGGAACAAGAGAAGAGGGCAATAGATAGT 1488
||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 180 AGTGGGATTTTGACTGAGTTGGAAGTTGTGGAGGAACAAGAGAAGAGGGCTATAGATAGT 239
Query 1489 CAAAATGAAGATGAGGATCATGATGAAGAAGAGATTGAGCTTGAGGATAACATTTGTAAG 1548
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 240 CAAAATGAAGATGAGGATCATGATGAAGAAGAAATTGAGCTTGAGGATAACATATGTAAG 299
Query 1549 ACTAGAGAAGATT 1561
|| ||||||||||
Sbjct 300 ACAAGAGAAGATT 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5