BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57490.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495848 jgi|Araly1|495848|fgenesh2_kg.8__1664__AT5G57490.1 1881 0.0
> Ahg495848 jgi|Araly1|495848|fgenesh2_kg.8__1664__AT5G57490.1
Length=1257
Score = 1881 bits (1018), Expect = 0.0
Identities = 1170/1240 (94%), Gaps = 24/1240 (2%)
Strand=Plus/Plus
Query 46 CTCTTCTC--CTTCACCTTTGAGTTTCTCGA-GG--C--TCTTTTCTT-AATTTTACTGC 97
|||||||| ||||||||||||||||||||| || | | |||| || |||||||||||
Sbjct 24 CTCTTCTCTTCTTCACCTTTGAGTTTCTCGAGGGTCCTTTTTTTTTTTCAATTTTACTGC 83
Query 98 TAAATAGTAGTGTTTACTGTCTTCAGCCGCCGTCGCCGGATTCCATTATCGAAGGCGACG 157
|||||||| | | ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 84 TAAATAGT-G-G-TTACTGTCTTCAGCCGCCGTCGCCGGATTTCATCATCGAAGGCGACG 140
Query 158 GAAGCAG-TATCTTAGGTTTTGTCCGACGAAGCTCCGTTTGATTGTTATCGGTTCCG-TT 215
||||||| | || |||| ||| || |||||||||| ||||||||| |||||||||| ||
Sbjct 141 GAAGCAGTTTTC-TAGGGTTTATCTAACGAAGCTCCTTTTGATTGTCATCGGTTCCGTTT 199
Query 216 GTATTCGTCGATCTTCCATTTTC-----GCATTTGTTTTCTATATCCGAAGATGGGAAGC 270
|||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 200 TTATTCGTCGATCTTCCATTTTCGTAAGGAATTTGTTTTCTACATCCGAAGATGGGAAGC 259
Query 271 AGTCCAGCTCCGTTTGCCGATATTGGCAAGAAAGCCAAAGATCTCCTAAACAAGGATTAC 330
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 260 AGTCCAGCTCCATTTGCCGATATTGGCAAGAAAGCCAAAGATCTCCTCAATAAGGATTAC 319
Query 331 ATTTTTGACCACAAGTTTACTCTCACAATGCTGAGTGCTACAGGAACGGAATTTGTGGCT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATTTTTGACCACAAGTTTACTCTCACAATGCTGAGTGCTACAGGAACGGAATTTGTGGCT 379
Query 391 ACTGGTTTGAAGAAGGATGATTTCTTTTTTGGCGATATAAGCACACTATATAAAGGTCAA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACTGGTTTGAAGAAGGATGATTTCTTTTTTGGCGATATAAGCACACTATATAAAGGTCAA 439
Query 451 AACACCATTGTTGATCTGAAAATCGACAGCCACTCTAGTGTGTCGACGAAAGTAACTCTC 510
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||
Sbjct 440 AACACCATTGTTGATCTGAAAATCGACAGCCACTCTTGTGTGTCCACAAAAGTAACTGTC 499
Query 511 AAAAATCTCTTGCCATCCGCTAAAGCTGTAATTAGTTTCAAAATACCTGATCACAAGTCT 570
|||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 500 AAAAATCTGATGCCATCTGCTAAAGCTGTTATTAGTTTCAAAATACCTGATCACAAGTCT 559
Query 571 GGCAAGCTGGATGTGCAATATGTTCATCCTCATGCTACGCTCAATTCCAGCATTGGCCTC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GGCAAGCTGGATGTGCAATATGTTCATCCTCATGCTACGCTCAATTCCAGCATTGGCCTC 619
Query 631 AACCCAACTCCTCTGTTAGATCTATCAGCAACTATCGGAAGCCAGAATGTTTGCCTTGGT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AACCCAACTCCTCTGTTAGATCTATCAGCAACTATCGGAAGCCAGAATGTTTGCCTTGGT 679
Query 691 GGTGAAGTCAGTTTCGACACAGCTTCATCATCACTAACAAAGTACAATGCAGGGATTGGT 750
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 680 GGTGAAGTCAGTTTCGACACAGCTTCATCATCACTAACCAAGTACAATGCAGGGATTGGT 739
Query 751 TTCAACAACCAAGGCGTCTCTGCTGCACTCATACTGGAGGATAAAGGGGAGAGTCTGAGA 810
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTCAACAACCAAGGCATCTCTGCTGCACTCATACTGGAGGATAAAGGGGAGAGTCTGAGA 799
Query 811 GCTACTTACGTCCACACAGTGAACCCAACCACATCCTTTGGTGCAGAACTGATCCGTCGC 870
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 800 GCTACTTACGTCCACACAGTGAACCCAACCACATCCTTCGGGGCAGAACTGATCCGTCGC 859
Query 871 TTCTCCAATTATAACAACAGCTTCACCGTCGGAAGCTCTCACTCTGTGGATCAATTCACA 930
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 860 TTCTCCAATTATAACAACAGCTTCACCGTTGGAAGCTCTCACTCTTTGGATCAATTCACA 919
Query 931 GTGGTTAAGACCAGATTTTCTAACAGTGGGAAAGCAGGGATGGTGGTCCAGAGAGAATGG 990
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 GTGGTTAAGACCAGATTTTCTAACAATGGGAAAGCAGGGATGGTGGTCCAGAGAGAATGG 979
Query 991 AGACCGAAGTCGCACATCACTTTCTCAGCTGAGTATGACTCAAAGGCTGTGACCTCTTCA 1050
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 980 AGACCGAAGTCTCTCATCACTTTGTCAGCTGAGTATGACTCAAAGGCTGTGACCTCTTCA 1039
Query 1051 CCAAAGCTTGGTCTCGCCCTCGCCCTCAAACCATAAAACAAGAAAAGAGCTCTTATCAGT 1110
|| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1040 CCGAGGCTTGGCCTCGCCCTCGCCCTCAAACCATAAAACAAGAAAAGAGCTTTTATCAGT 1099
Query 1111 TTGGAAAACACAAACTAAACAATTCAATTTTTCACCAAGT-GCTaaaaaaaTCACCCCCA 1169
|||||| |||||| |||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct 1100 TTGGAA--CACAAATTAAACAATTCAAATTTTCACCAAGTTGCTAAAAAAATTACCCCCA 1157
Query 1170 AACGAACGGTTTGTAGGGTTATTGAATC-A-CTTTTGCATTAATATTTGTTTTTTCATTG 1227
|||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1158 AACGAAAGGTTTGTAGGGTTATTAAATTTAACTTTTGCATTAATATTTGTTTTTTCATTG 1217
Query 1228 TGATGTGAAAGAAAAGGGAGTGAGCAAAACCCAAtttttt 1267
|||||||||| |||||||||||||||||||||||||||||
Sbjct 1218 TGATGTGAAAAAAAAGGGAGTGAGCAAAACCCAATTTTTT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5