BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57500.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950440 jgi|Araly1|950440|scaffold_802327.1 1620 0.0
> Ahg950440 jgi|Araly1|950440|scaffold_802327.1
Length=997
Score = 1620 bits (877), Expect = 0.0
Identities = 957/997 (96%), Gaps = 0/997 (0%)
Strand=Plus/Plus
Query 27 GCTTTCATTGAACAAGGAATATGAAATCTTCTCCAAGATCAGAAGGAAGAAAGTTCATTA 86
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCTTTCATTGAACAAGGAAGATGAAATCTTCTCCAAGATCAGAAGGAAGAAAGTTCATAA 60
Query 87 TCCCTTCTTTCTTCTTCATCATAGCTCTTTGTGTACTAGCTTTCATCAACGAGATCAGAT 146
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 61 TCCCTTCTTTCTTCTTCATCATAGCTCTTTGTGTATTAGCTTTCATCAACGAGATTAGAT 120
Query 147 TCGATAGCTTATTGAGTTTTGGAAGATGTGCTTTGTCAAATGTTCCTATGAATAATGGTT 206
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 121 TCGATAGCTTATTAAGTTTTGGAAGATGTGCTTTGTCAAATGTTCCGATGAATAACGGTT 180
Query 207 CATCAGAGACTCCATTGTTGTCTTCTTCTCCTGTTGATGATGAGATTAGGATTCTTATTG 266
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CATCGGAGACTCCATTGTTGTCTTCTTCTTCTGTTGATGATGAGATTAGGATTCTTATTG 240
Query 267 GAATCCTTACACTTCCTGATCAGTATTCACGTCGCCATTTTCTCCGGATGATCTACGGGA 326
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 241 GAATCCTTACACTTCCTGATCAGTATCCACGTCGGCATTTTCTCCGGATGATCTACGGGA 300
Query 327 CACAAAATGTTCCGGACGGTGTTAAGGTTGATGTGAAGTTTGTGTTCTGTAATTTGACTA 386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 CACAGAATGTTCCGGACGGTGTTAAGGTTGATGTGAAGTTTGTGTTCTGTAATTTAACTA 360
Query 387 AAGAAGACCAGAAAGTGCTTGTTGCTTTGGAGATTATGCGTTATGATGACATCATTATAC 446
||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAAGATCAAAAAGTGCTCGTGGCTTTGGAGATTATGCGTTATGATGACATCATTATAC 420
Query 447 TCAACTGCAATGAGAATATGAACAAAGGCAAGACTTACACATACTTCTCAAGCTTACCAG 506
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAATTGCAATGAGAATATGAACAAAGGCAAGACTTACACATACTTCTCAAGCTTACCAG 480
Query 507 ACATATTCAATGAGACCGATGCACAAAAACCACCGTACCATTACGTAATGAAAGCCGACG 566
|||||||||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||
Sbjct 481 ACATATTCAATGAGACGGATGCACCAAACCCGCCGTATCATTACGTAATGAAAGCCGACG 540
Query 567 ACGACACATACATAAGACTAGAAAGTCTCGTTGCATCTTTGAGACCACTCCCTCGAGAAG 626
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 541 ACGACACATACATAAGACTAGAAAGTCTCGTTGCATCTTTAAGACCACTCGCTCGAGAAG 600
Query 627 ATCTTTACTACGGCTATGTAATTCCATGTCCAAGCATGGACCCATTTGTTCATTACATGT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTTTACTACGGCTATGTAATTCCATGTCCAAGCATGGACCCATTTGTTCATTACATGT 660
Query 687 CAGGAATGGGTTACTTAGTGTCATGGGATATTGCGGTTTGGCTCAAAGACTCGGAAATTC 746
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 661 CAGGAATGGGTTACTTAGTGTCATGGGACATAGCGGTTTGGCTCAAAGACTCGGAAATTC 720
Query 747 CCAAGAAACATCTAGAAGGTCCTGAAGACAAAGTGTTTGGCGATTGGATTCGAGAAGGAA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCAAGAAACATCTAGAAGGTCCTGAAGACAAAGTGTTTGGCGATTGGATTCGAGAAGGAA 780
Query 807 GACGAGGAAAAAACCGGTTTAACGCTAAGTGGTCCATGTATAATTTCCCTGAGCCACCGA 866
|||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct 781 GACGAGGAAAAAACCGGTTTAACGCTAAATGGTCGATGTATAACTTCCCCGAGCCACCAA 840
Query 867 CTAGATGCACACATGAGCTTTGGCCAGACACTATTGCCGTTCATTTGTTAAAGAACCAAG 926
|| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 841 CTCGATGCACACATGAGCTTTGGCCAGACACTATCGCGGTTCATTTGTTGAAGAACCAAG 900
Query 927 AGAAGTGGATACGTACATTGAACTATTTCAATGTTACTAGCAATCTCAAGCCTTCTAAAC 986
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AGAAGTGGATACGAACATTGAACTATTTCAATGTTACTAGCAATCTCAAGCCTTCAAAAT 960
Query 987 TATACCACATACCGTAGATAGTCTTTTTGTTTGCTTT 1023
||||||||||||||||||||||||||| |||||||||
Sbjct 961 TATACCACATACCGTAGATAGTCTTTTCGTTTGCTTT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5