BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57510.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950441 jgi|Araly1|950441|scaffold_802328.1                        649    0.0  


> Ahg950441 jgi|Araly1|950441|scaffold_802328.1
Length=433

 Score =  649 bits (351),  Expect = 0.0
 Identities = 379/393 (96%), Gaps = 0/393 (0%)
 Strand=Plus/Plus

Query  1    ATGACAAAGAGCAAAGACGGTTCGCTACTAAACCGGTTGAGACAAGCAGTGAATAAAGTA  60
            ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  21   ATGGCAAAGAGCAAAGACCGTTCGCTACTAAACCGGTTGAGACAAGCCGTGAATAAAGTA  80

Query  61   AAATTCGTGTTAAGTTTCAAGATAAATAGCCTCTGGGGTCTCGTACCGATGCTTGGTTCT  120
            | |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct  81   AGATTCGTGTTAAGTTTCAAGATAAACAGCCTCTGGGATCTCGTACCGATGCTTGGTTCT  140

Query  121  TCCTCTTCTTCTTCGTCTCTTCGGTTAAGTTTCAACGATAGACCTGGTTTAACAGCGGCT  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  141  TCCTCTTCTTCTTCGTCTCTTCGGTTAAGTTTCAACGATAGACCCGGTTTAACAGCGGCT  200

Query  181  TTTACAGAGAATGAACCGGACTCAACCGGTTCTTCAAGGGGAGCGTTGTATAGAACCGTG  240
            ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  201  TTTGCAGAGAATGAACCGGACTTAAACGGTTCTTCAAGGGGAGCGTTGTATAGAACCGTG  260

Query  241  AGTTATGATCAATCTTCAGATGAAGACATTGACAACAAAGCTGAGATGTTCATAGCTAAT  300
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  261  AGTTATGATCAATCTTCAGATGAAGACATAGACAACAAAGCTGAGATGTTCATAGCTAAC  320

Query  301  TTCTACAGACAGCTTAAGATTGAGAGACAAATCTCTTTGGAACTTAAATATTGCCAGGGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  321  TTCTACAGACAGCTTAAGATTGAGAGACAAATCTCTTTGGAACTTAAATATTTTCAGGGT  380

Query  361  AATAATCAGAGTTTCAACTACAGATCGCCTTAA  393
            |||||||||||||||||||||||||||||||||
Sbjct  381  AATAATCAGAGTTTCAACTACAGATCGCCTTAA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5