BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57520.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497512 jgi|Araly1|497512|fgenesh2_kg.675__1__AT5G57520.1 918 0.0
> Ahg497512 jgi|Araly1|497512|fgenesh2_kg.675__1__AT5G57520.1
Length=646
Score = 918 bits (497), Expect = 0.0
Identities = 619/673 (92%), Gaps = 27/673 (4%)
Strand=Plus/Plus
Query 1 tctctcatctctctaatctctctttctctctctatctctAAGAATATATAAAGGTATGGA 60
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 1 TCTCTCATCTCTCTAATCTCTCTTTCTCTCTCTATCTCT-A-AA-AT-TAAAGGTATGGA 56
Query 61 CTACCAGCCAAACACATCCCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 120
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CTTTCAGCCAAACACATCTCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 116
Query 121 CCTAGAACTTGTTCTCGAGCcttcttccatgtcttcttcttcatcttcttcCACGAACTC 180
|||||||||||||||||||||||||| | || | | |||||||||||||||||
Sbjct 117 CCTAGAACTTGTTCTCGAGCCTTCTT-C-TG-------C-T--TCTTCTTCCACGAACTC 164
Query 181 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 224
Query 241 CAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 284
Query 301 GAAGAGTCGAGAACTCTTTAGATCCTCAAACACTGTTGATTCTGATCAGCCTTACCCGTT 360
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 285 GAAGAGTCGAGAACTTTTTAGATCCTCAAACACTGTTGATTCCGACCAGCCTTACCCGTT 344
Query 361 CTCCGGTCGCTTTGAGCTTTACGGCCGTGGCTACCAAGGATTTCTCGAAAGTGGCGGCTC 420
|||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 345 CTCCGGCCGGTTTGAACTCTACGGCCGTGGCTACGAAGGATTTCTCGAAAGTGGCGGCTC 404
Query 421 GAGGGACTTCTCCGCCCGCCGTGTGCCGGAGAGTGGTCTTGATCAGGATCAGGAGAAGAG 480
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 405 GAGGGACTTCTCCTCTCGCCGTGTGCCGGAGAGTGGTCTTGACCAGGATCAGGAGAAGAG 464
Query 481 TCACCTTGACTTATCCTTAAGGCTCTAAAAGAATCTTATATTTTGTTAGTCTATATATTA 540
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |
Sbjct 465 TCACCTTGACTTATCCTTAAGGCTCTAAAATAATCTTATATTTTGTTAGTC-ATAT-T-A 521
Query 541 TCATATCAATTGTTAATCTTAAAATTGATTGTTTTACTTATTAGTCATTTCCTATTATCT 600
|| |||| |||||| ||||||| | | |||||||||||||||||||||| | | ||||||
Sbjct 522 TCGTATCGATTGTTTATCTTAATAGTAATTGTTTTACTTATTAGTCATTAC-TCTTATCT 580
Query 601 GAAAGTTTTCTTTGTAAGTTGTAACTATGGTCCTAAATTCAAATCCAAATTTGATTTTGG 660
|||| || ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 581 GAAAATTCTCTTTGTAA-------CTATGGTCCTAAATTCAAATCAAAATTTGATTTTGG 633
Query 661 AAGATGGTACCTA 673
|||||||||||||
Sbjct 634 AAGATGGTACCTA 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5