BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57520.1 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg497512 jgi|Araly1|497512|fgenesh2_kg.675__1__AT5G57520.1 918 0.0 > Ahg497512 jgi|Araly1|497512|fgenesh2_kg.675__1__AT5G57520.1 Length=646 Score = 918 bits (497), Expect = 0.0 Identities = 619/673 (92%), Gaps = 27/673 (4%) Strand=Plus/Plus Query 1 tctctcatctctctaatctctctttctctctctatctctAAGAATATATAAAGGTATGGA 60 ||||||||||||||||||||||||||||||||||||||| | || || |||||||||||| Sbjct 1 TCTCTCATCTCTCTAATCTCTCTTTCTCTCTCTATCTCT-A-AA-AT-TAAAGGTATGGA 56 Query 61 CTACCAGCCAAACACATCCCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 120 || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 57 CTTTCAGCCAAACACATCTCTACGTCTAAGCCTACCAAGTTACAAGAACCACCAACTAAA 116 Query 121 CCTAGAACTTGTTCTCGAGCcttcttccatgtcttcttcttcatcttcttcCACGAACTC 180 |||||||||||||||||||||||||| | || | | ||||||||||||||||| Sbjct 117 CCTAGAACTTGTTCTCGAGCCTTCTT-C-TG-------C-T--TCTTCTTCCACGAACTC 164 Query 181 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 ATCATCATGTTTGGAGCAGCCTAGGGTATTCTCATGTAACTATTGTCAAAGAAAGTTTTA 224 Query 241 CAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TAGCTCTCAAGCTCTTGGTGGTCATCAAAACGCTCATAAGCTTGAGAGAACCTTAGCCAA 284 Query 301 GAAGAGTCGAGAACTCTTTAGATCCTCAAACACTGTTGATTCTGATCAGCCTTACCCGTT 360 ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| Sbjct 285 GAAGAGTCGAGAACTTTTTAGATCCTCAAACACTGTTGATTCCGACCAGCCTTACCCGTT 344 Query 361 CTCCGGTCGCTTTGAGCTTTACGGCCGTGGCTACCAAGGATTTCTCGAAAGTGGCGGCTC 420 |||||| || ||||| || ||||||||||||||| ||||||||||||||||||||||||| Sbjct 345 CTCCGGCCGGTTTGAACTCTACGGCCGTGGCTACGAAGGATTTCTCGAAAGTGGCGGCTC 404 Query 421 GAGGGACTTCTCCGCCCGCCGTGTGCCGGAGAGTGGTCTTGATCAGGATCAGGAGAAGAG 480 ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 405 GAGGGACTTCTCCTCTCGCCGTGTGCCGGAGAGTGGTCTTGACCAGGATCAGGAGAAGAG 464 Query 481 TCACCTTGACTTATCCTTAAGGCTCTAAAAGAATCTTATATTTTGTTAGTCTATATATTA 540 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | | Sbjct 465 TCACCTTGACTTATCCTTAAGGCTCTAAAATAATCTTATATTTTGTTAGTC-ATAT-T-A 521 Query 541 TCATATCAATTGTTAATCTTAAAATTGATTGTTTTACTTATTAGTCATTTCCTATTATCT 600 || |||| |||||| ||||||| | | |||||||||||||||||||||| | | |||||| Sbjct 522 TCGTATCGATTGTTTATCTTAATAGTAATTGTTTTACTTATTAGTCATTAC-TCTTATCT 580 Query 601 GAAAGTTTTCTTTGTAAGTTGTAACTATGGTCCTAAATTCAAATCCAAATTTGATTTTGG 660 |||| || ||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 581 GAAAATTCTCTTTGTAA-------CTATGGTCCTAAATTCAAATCAAAATTTGATTTTGG 633 Query 661 AAGATGGTACCTA 673 ||||||||||||| Sbjct 634 AAGATGGTACCTA 646 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5