BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57530.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495852 jgi|Araly1|495852|fgenesh2_kg.8__1668__AT5G57530.1 1369 0.0
Ahg952394 jgi|Araly1|952394|scaffold_67500002.1 599 1e-170
Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1 97.1 2e-19
Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1 65.8 6e-10
> Ahg495852 jgi|Araly1|495852|fgenesh2_kg.8__1668__AT5G57530.1
Length=934
Score = 1369 bits (741), Expect = 0.0
Identities = 849/901 (94%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 44 acaacagcaaAAAATGGCGGCTTTTGCGACCAAACAGTCTCCCTTGTTGTTGGCGTCTCT 103
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ACAACAGCAAAAAATGGCGGCTTCTGCGACCAAACAGTCTCTGTTGTTGTTGGCGTCTCT 60
Query 104 TCTGATCTTGATCGGCGTAGCCACCGGAAGTTTCTACGACAGCTTCGATATCACTTGGGG 163
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGGTCTTGATCGGCGTAACCACCGGAAGTTTCTACGACAGCTTCGATATCACTTGGGG 120
Query 164 AGCTGGTCGTGCTAATATATTTGAGAGTGGACAACTCTTGACTTGCACTCTCGACAAGA- 222
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTGGTCGTGCTAATATATTCGAGAGTGGACAACTCTTGACTTGCACTCTCGACAAGAT 180
Query 223 CATCCGGTTCAGGTTTTCAATCCAAGAAAGAGTATTTGTTCGGAAAGATCGATATGAAGA 282
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 C-TCCGGTTCAGGTTTTCAATCGAAGAAAGAGTATTTGTTCGGAAAGATCGATATGAAGA 239
Query 283 TAAAACTTGTTCCC-GGAAATTCTGCCGGAACCGTCACAGCTTACTACCTTTCTTCAAAA 341
| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAACTTGT-CGCTGGAAATTCTGCCGGAACCGTCACAGCTTACTACCTTTCTTCAAAA 298
Query 342 GGTGAGACATGGGATGAGATTGATTTCGAGTTCTTGGGTAACGTTACTGGACAGCCTTAT 401
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 299 GGTGAGAAATGGGATGAGATCGATTTCGAGTTCTTGGGTAACGTTACCGGACAGCCTTAT 358
Query 402 GTTATCCATACAAATGTCTTTACCGGAGGTAAAGGTAACCGCGAAATGCAGTTCTATCTC 461
||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 GTTCTCCATACAAATGTGTTTACCGGAGGTAAAGGTGACCGCGAAATGCAGTTCTATCTC 418
Query 462 TGGTTTGATCCCACTGCTGATTTCCACACTTACACCGTGCTTTGGAACCCTCTCAACATC 521
||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 419 TGGTTTGATCCCACTGCGGATTTCCACACTTACACCGTCCTTTGGAATCCTCTTAACATC 478
Query 522 ATCTTTCTGGTTGATGGTATCCCAATCCGGGTGTTCAAGAACAATGAGGCTAACGGCGTG 581
|||||||| || || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 ATCTTTCTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTT 538
Query 582 GCTTACCCGAAAAGCCAACCAATGAAGATCTACTCAAGTCTATGGGAAGCTGATGATTGG 641
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 539 GCTTACCCGAAAAACCAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGG 598
Query 642 GCCACACAAGGCGGGAAAGTCAAGACCGATTGGACCAACGCTCCATTCAGCGCTTCCTAC 701
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 599 GCCACACAAGGCGGGAGAGTCAAGATCGATTGGACTAACGCTCCATTCAGCGCTTCCTAC 658
Query 702 AGAAGCTTT-AACGATGTGGATTGCTGCAGCCGGACCTCGATATGGAACTGGGTTACGTG 760
| ||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 659 AAAAG-TTTCAACGATGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTG 717
Query 761 TAATGCGAATAGCAACTCGTGGATGTGGACTACACTTAATTCAAATCAGCTTGGACAGCT 820
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 718 TAATGCGAATAGCAACTCGTGGATGTGGACTACGCTTAACGCAAATCAGCTTGGACAGCT 777
Query 821 GAAGTGGGTGCAAAAAGATTATATGATCTATAACTATTGTACGGATTTCAAGAGGTTCCC 880
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 GAAGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCC 837
Query 881 TCAAGGTTTACCCACTGAATGCAACCTCAACTGATCGTATTAC-AGAGAAAATTCAAGCA 939
||||||||||||||| |||||||||| ||| |||||||||||| | ||||||||||||||
Sbjct 838 TCAAGGTTTACCCACGGAATGCAACCACAATTGATCGTATTACCA-AGAAAATTCAAGCA 896
Query 940 C 940
|
Sbjct 897 C 897
> Ahg952394 jgi|Araly1|952394|scaffold_67500002.1
Length=478
Score = 599 bits (324), Expect = 1e-170
Identities = 384/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 524 CTTTCTGGTTGATGGTATCCCAATCCGGGTGTTCAAGAACAATGAGGCTAACGGCGTGGC 583
|||||| || || || |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 68 CTTTCTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTTGC 127
Query 584 TTACCCGAAAAGCCAACCAATGAAGATCTACTCAAGTCTATGGGAAGCTGATGATTGGGC 643
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 128 TTACCCGAAAAACCAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGGGC 187
Query 644 CACACAAGGCGGGAAAGTCAAGACCGATTGGACCAACGCTCCATTCAGCGCTTCCTACAG 703
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 188 CACACAAGGCGGGAGAGTCAAGATCGATTGGACTAACGCTCCATTCAGCGCTTCCTACAA 247
Query 704 AAGCTTT-AACGATGTGGATTGCTGCAGCCGGACCTCGATATGGAACTGGGTTACGTGTA 762
||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 248 AAG-TTTCAACGATGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTGTA 306
Query 763 ATGCGAATAGCAACTCGTGGATGTGGACTACACTTAATTCAAATCAGCTTGGACAGCTGA 822
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 307 ATGCGAATAGCAACTCGTGGATGTGGACTACGCTTAACGCAAATCAGCTTGGACAGCTGA 366
Query 823 AGTGGGTGCAAAAAGATTATATGATCTATAACTATTGTACGGATTTCAAGAGGTTCCCTC 882
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 367 AGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCCTC 426
Query 883 AAGGTTTACCCACTGAATGCAACCTCAACTGATCGTATTAC-AGAGAAAATTC 934
||||||||||||| |||||||||| ||| |||||||||||| | |||||||||
Sbjct 427 AAGGTTTACCCACGGAATGCAACCACAATTGATCGTATTACCA-AGAAAATTC 478
> Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1
Length=961
Score = 97.1 bits (52), Expect = 2e-19
Identities = 364/506 (72%), Gaps = 56/506 (11%)
Strand=Plus/Plus
Query 228 GGTTCAGGTTTTCAATCCAAGAAAGAGTATT-TGT-TCGG-AAAGATCGA--TATGAAGA 282
||||||||||| ||||| || |||||| || | | | || |||| ||| | | || |
Sbjct 212 GGTTCAGGTTTCCAATCTAATCAAGAGT-TTCTCTAT-GGCAAAG-CCGAGGT-TCAA-A 266
Query 283 TAAAACTTGTTCCC-GGAAATTCTGCCGGAACCGTCACAGC-TTACTACCTTTCTTCAAA 340
| ||||||| |||| || || ||||| |||||||||||| | || ||| ||| ||
Sbjct 267 TGAAACTTG-TCCCTGGTAACTCTGCTGGAACCGTCACAACATT-CTATCTTAAATC-TC 323
Query 341 AGGTG-A-GACATGGGATGAGATTGATTTCGAGTTCTTGGGTAACGTTACTGGACAGCCT 398
|| | | |||||||||||||||||||||||||||||||| ||| | | ||| || ||
Sbjct 324 CGG-GAACTACATGGGATGAGATTGATTTCGAGTTCTTGGGGAACATAAGTGGTCATCCA 382
Query 399 TATGTTATCCATACAAATGTCTTTAC-CGGA-GG-TAAAGGTA-ACCGCGAA-ATGCAGT 453
||| | |||| || ||||| || || | | || | | || | || ||| | ||||
Sbjct 383 TATACTCTCCACACTAATGT-TT-ACACAAAAGGCTCA-GG-AGACAAAGAACAA-CAGT 437
Query 454 T-CTATCTCTGGTTTGATCCCA-CTGCTGATTTCCACACTTACACCGTG-CTTTGGAACC 510
| | |||| |||||||| |||| | ||| | |||||||||||| | | | | |||| |
Sbjct 438 TTC-ATCTATGGTTTGA-CCCAACCGCTAACTTCCACACTTACTGCATCACAT-GGAATC 494
Query 511 CTCTCAAC-ATCATCTTT-CTGGTTGATGGTATCCCAATCCGGGTGTTCAAGAACAATGA 568
||| || || || ||| ||| ||||||| || ||||| | | ||||| ||| ||
Sbjct 495 CTCA-AAGGATTATTTTTACTG-TTGATGGGATTCCAATTAGAGAGTTCATGAATGCCGA 552
Query 569 GGCTAACG-GC-GTGGC-TTACCCGAA--AAGCCAACCAATGAAGATCTACT-CAAGTCT 622
| | | || | || | || ||| || |||| ||||||||| | |||| | | |||||
Sbjct 553 GTC-A-CGTGGAGTCCCATT-CCC-AACGAAGC-AACCAATGAGGCTCTA-TGCGAGTCT 606
Query 623 ATGGGAAGCTGATG-ATTGGGCCACACAAGGCG-GGAA-AGTCAAGACCGATTGGACCAA 679
||||||||||| | ||||||| ||| | || | ||| || || || |||||| | ||
Sbjct 607 CTGGGAAGCTGA-GCATTGGGCTACA-AGGG-GAGGATTAGAGAAAACAGATTGGTCAAA 663
Query 680 CGCTCCATTCAGCGCTTCCTACAGAA 705
||||| |||| ||||| |||||||
Sbjct 664 AGCTCCTTTCACCGCTTTTTACAGAA 689
> Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1
Length=1008
Score = 65.8 bits (35), Expect = 6e-10
Identities = 58/69 (84%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 351 TGGGATGAGATTGATTTCGAGTTCTTGGGTAA-CGTTACTGGACAGCCTTATGTTATCCA 409
||||||||||||||||||||||||||||| || | ||| ||| || || ||| | ||||
Sbjct 352 TGGGATGAGATTGATTTCGAGTTCTTGGGAAATC-TTAGTGGTCATCCATATACTCTCCA 410
Query 410 TACAAATGT 418
||| |||||
Sbjct 411 TACTAATGT 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5