BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57550.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495853 jgi|Araly1|495853|fgenesh2_kg.8__1669__AT5G57550.1 1718 0.0
Ahg354208 jgi|Araly1|354208|fgenesh1_pg.C_scaffold_7001381 344 7e-94
> Ahg495853 jgi|Araly1|495853|fgenesh2_kg.8__1669__AT5G57550.1
Length=1049
Score = 1718 bits (930), Expect = 0.0
Identities = 1010/1049 (96%), Gaps = 4/1049 (0%)
Strand=Plus/Plus
Query 1 GAATGATTTCAATTCTCTATCTTATTGACACATAAACATGGACCGGTCCACTTTCATCTT 60
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAACGATTTCAATTCTCCATCTTATTGACACATAAACATGGACCGGTCCACTTTGATCTT 60
Query 61 ATCTCTACTCTTCACACTCACTGTCTCGACTACGACCCTCTTCTCTCCGGTTTTC-GCAG 119
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || |
Sbjct 61 ATCTCTACTCTTCACACTCACCGTCTCGACCACGACCCTCTTCTCTCCGGTTTTCTGC-G 119
Query 120 GAACGTTCGACACAGAATTCGATATCACTTGGGGTGATGGTCGTGGCAAGGTTCTTAACA 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 GAACTTTCGACACAGAATTCGATATCACTTGGGGTGATGGTCGTGGCAAGGTCCTTAACA 179
Query 180 ACGGAGAGCTTCTCACTCTCTCCCTCGACAGAGCCTCCGGCTCTGGTTTTCAAACCAAGA 239
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACGGAGAGCTTCTCACTCTTTCCCTCGACAGAGCCTCAGGCTCTGGTTTTCAAACCAAGA 239
Query 240 AAGAGTATTTGTTCGGGAAAATCGACATGCAGCTCAAACTCGTCCCTGGAAACTCCGCCG 299
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AAGAGTATTTATTCGGGAAAATCGATATGCAGCTCAAACTCGTCCCTGGAAACTCCGCCG 299
Query 300 GAACCGTCACTGCCTACTACTTGAAGTCAAAAGGTGATACGTGGGACGAAATCGATTTCG 359
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 GAACCGTCACCGCCTACTACTTGAAGTCGAAAGGTGATACGTGGGACGAAATCGATTTCG 359
Query 360 AGTTTCTTGGTAATCTAACTGGTGATCCGTATACCATGCATACGAATGTGTATACTCAAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTTTCTTGGTAATCTAACTGGTGATCCGTATACCATGCATACGAATGTGTATACTCAAG 419
Query 420 GCAAAGGTGATAGAGAACAACAATTTCATCTCTGGTTCGATCCAACCGCTGATTTCCACA 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAAGGTGATAGAGAACAACAATTCCATCTCTGGTTCGATCCAACCGCTGATTTCCACA 479
Query 480 CTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATGGTTGATGATATTCCGGTAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATGGTTGATGATATTCCGGTAA 539
Query 540 GAGAATTCAAGAATCTACAACATATGGGTAT-CCAGTATCCAAAATTGCAGCCGATGAGG 598
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 540 GAGAATTCAAGAATCTACAACATATGGGTATTCC-GTATCCAAAATTGCAGCCGATGAGG 598
Query 599 TTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGAGGTCTCGTTAAGACT 658
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 CTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGAGGTCTTGTTAAGACT 658
Query 659 GACTGGTCCAAGGCACCATTCACCGCTTCTTACAGAAACTTTAGAGCGGATGCATGTGTT 718
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 659 GACTGGTCCAAGGCACCATTCACCGCTTCTTACAGGAACTTTAGGGCGGATGCATGTGTT 718
Query 719 TCCTCGGGCGGAAGATCATCTTGTCCTGCCGGTTCACCTAGATGGTTCTCTCAAAGGCTT 778
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 TCCTCGGGCGGAAGATCATCTTGTCCCGCCGGTTCACCTAGATGGTTCTCTCAAAGGCTT 778
Query 779 GATCTAACAGCGGAAGATAAGATGAGAGTGGTGCAGAGGAAGTACATGATCTATAACTAT 838
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 GATCTAACAGCAGCAGATAAGATGAGAGTGGTGCAGAGGAAGTACATGGTCTATAACTAT 838
Query 839 TGTACGGACACCAAAAGGTTTCCTCAAGGATTTCCAAAGGAGTGTAGACACTAGCTACGA 898
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTACAGACACCAAAAGGTTTCCTCAAGGATTTCCAAAGGAGTGTAGACACTAGCTACGG 898
Query 899 GAATTAATGTGTGATCCGAAACTCCAAAGCTAGTATTGTATAGGTTCGTCTAAATTATAT 958
|||||||||| |||||||||||||||||||||||| | | ||| |||||| |||||||||
Sbjct 899 GAATTAATGTTTGATCCGAAACTCCAAAGCTAGTAGTATGTAGATTCGTCCAAATTATAT 958
Query 959 ATGTAATGTTTATGTTTATTTAGGTTCTGTAATAAGCAATTTCCCCTGTTTCTATGTAGA 1018
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 959 ATGTAATGTTTATGTTTATTTAGTTTCTGTATTAAGCAATTTCCCCTGTTTCTGTGTAGA 1018
Query 1019 TATTCTCATAATAAAATGGGCGTGAGTTA 1047
|||| ||||||||||||||||||| ||||
Sbjct 1019 TATTGTCATAATAAAATGGGCGTGTGTTA 1047
> Ahg354208 jgi|Araly1|354208|fgenesh1_pg.C_scaffold_7001381
Length=861
Score = 344 bits (186), Expect = 7e-94
Identities = 419/528 (79%), Gaps = 30/528 (6%)
Strand=Plus/Plus
Query 179 AACGGAGAGCTTCTCACTCTCTCCCTCGACAGAGCCTCCGGCTCTGGTTTTCAAACCAAG 238
||||| || |||||||||||||| ||||||| ||| || ||||| || || ||| |||||
Sbjct 130 AACGGCGATCTTCTCACTCTCTCTCTCGACAAAGCTTCAGGCTCAGGATTCCAATCCAAG 189
Query 239 AAAGAGTATTTGTTCGGGAAAATCGACATGCAGCTCAAACTCG-TCCCTGGAAACTCCGC 297
|| || |||||||| || ||||||||||||||| |||| |||| | || |||||||||||
Sbjct 190 AACGAATATTTGTTTGGTAAAATCGACATGCAGATCAAGCTCGTTGCC-GGAAACTCCGC 248
Query 298 CGGAACCGTCACTGCCTACTACTTGAAGTCAAAAGG-TGATACGTGGGACGAAATCGATT 356
||||| ||||| || ||||| ||||| || || | ||| |||||||| || ||||
Sbjct 249 TGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGAT-CTACATGGGACGAGATTGATT 307
Query 357 TCGAGTTTCTT-GGTAATCTAACTGGTGATCCGTATAC-CA-TGCATACGAATGTGTATA 413
||||| ||||| || || |||| ||| ||||| | ||| || | ||||| ||||| | ||
Sbjct 308 TCGAG-TTCTTGGGAAACCTAAGTGGAGATCC-T-TACACACTTCATACCAATGTCTTTA 364
Query 414 CTCAAGGCAAAGGTGATAGAGAACAACAATTTCAT-CTCTGGTTCGATCCAACC-GCTGA 471
| ||||||||||||||||||||||||||||| || |||||||||||||| || | |||
Sbjct 365 CGCAAGGCAAAGGTGATAGAGAACAACAATT-CAAACTCTGGTTCGATCCCACAAG-TGA 422
Query 472 TTTCCACACTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATG-GTTGATG-AT 529
|||||||||||||||| | |||||||||| || | |||| | ||| | || |||| |
Sbjct 423 TTTCCACACTTACTCTATCCTATGGAACCCACAACGCATCATATTC-TCCGTGGATGGA- 480
Query 530 ATTCCGGTAAGAGAATTCAAGAATC-TACAA-CAT-ATGGGTA-TCCAGTATCC-AA-AA 583
| ||| |||||||||||||||| | | || | | | || | || || ||| || ||
Sbjct 481 ACTCCAATAAGAGAATTCAAGAA-CATGGAATC-TCAAGGA-ACTCT-GTTTCCTAAGAA 536
Query 584 TTGCAGCCGATGAGGTTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGA 643
| ||||||||||| | |||||||||||||||||||| || | ||||| ||||||||
Sbjct 537 T--CAGCCGATGAGAATGTACTCGAGTCTATGGAACGCTGAAGACTGGGCCACAAGGGGT 594
Query 644 GGTCTCGTTAAGACTGACTGGTCCAAGGCACCATTCACCGCTTCTTAC 691
|||||||| || || |||||||| || || || ||||||||||| |||
Sbjct 595 GGTCTCGTCAAAACCGACTGGTCTAAAGCTCCCTTCACCGCTTCCTAC 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5