BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57580.1
Length=2434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495855 jgi|Araly1|495855|fgenesh2_kg.8__1671__AT5G57580.1 3541 0.0
Ahg492240 jgi|Araly1|492240|fgenesh2_kg.7__1673__AT4G25800.2 1155 0.0
> Ahg495855 jgi|Araly1|495855|fgenesh2_kg.8__1671__AT5G57580.1
Length=2322
Score = 3541 bits (1917), Expect = 0.0
Identities = 2213/2351 (94%), Gaps = 39/2351 (2%)
Strand=Plus/Plus
Query 4 GAGTCGCCACAGTTGACCGATTAACCCAAAACTGCGACGACTCAAAACAAAGAGA-T-AC 61
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | |
Sbjct 1 GAGTCGCCATAGTTGACCGATTAACCCAAAATTGCGAAGACTCAAAACAAAGAGACTGTC 60
Query 62 T---ATACTATCATCAAAACTCCAATTCTCTATTCACTACTAATCATTGTTCCAATTCAA 118
| | ||||||||||||| || || ||||||||||||||||| |||| |||
Sbjct 61 TCGAAAACTATCATCAAAA----AA---TC----CACTACTAATCATTGTTTCAATCCAA 109
Query 119 CGCCGGTGGCTTTTAATCGGCGAGACACTCTCTGATTTCTCGGTCTCCGATTAACTGATC 178
||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 110 CGCCGCTGGTTTTTAATCGGCGAGTTACTCTCTGCTTTCTCCGTCTCCGATTAACTGATC 169
Query 179 TAGGttttttttGGGGAGGAGAATGCAAAGGTAGATGATGGATAGTGGTAATAATAATAT 238
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 170 TAGGTTTTTTTTTGGGAGGAGAATGCAGAGGTAGATGATGGATAGAGGTAATAATAATAT 229
Query 239 GAATAGAGCCAAGAGGAATTTGGATGGGAACGATGATGATCAGCCTGAGCGAAAACGCCC 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 230 GAATAGAGCAAAGAGGAATTTGGATGGGAACGATGATGATCAGCCTGAGCGAAAACGTCC 289
Query 299 TGCTTTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTAGATAGTTTGCAGAAGCTTTGCTC 358
|||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 290 TGCTCTTGCTAGTGTCATTGTTGAGGCTCTTAAAGTAGACAGTTTGCAGAAGCTTTGTTC 349
Query 359 CTCTTTGGAACCTATTCTCCGCCGAGTTGTCAGCGAGGAACTGGAACGTGCTTTAGCAAA 418
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||
Sbjct 350 GTCTTTGGAACCTATTCTTCGCCGAGTTGTCAGCGAGGAAGTGGAACGTGCTTTAGCGAA 409
Query 419 ACTAGGCCCTGCTAGGCTTACTGGAAGTTC-GGGCTCTTCTCCAAAGCGAATTGAAGGTC 477
|||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 410 ACTAGGTCCTGCTAGGCTTACTGGAAGTTCTGGG-TCTTCTCCTAAGCGAATTGAAGGTC 468
Query 478 CGGATGGTCGGAAGTTACAGTTGCACTTCAAATCTAGGTTATCTCTCCCGTTATTCACTG 537
| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 CAGATGGTCGGAATTTACGGTTGCACTTCAAATCTAGGTTATCTCTCCCCTTATTCACTG 528
Query 538 GGGGGAAAGTAGAAGGAGAGCAAGGTGCTGTGATTCATGTTGTCTTGATTGATGCAAACA 597
| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 529 GAGGGAAAGTAGAAGGAGAGCAAGGTGCTGCAATTCATGTCGTCTTGATTGATGCAAACA 588
Query 598 CTG-GCCGTGCTGTGGTATATGGTCCAGAGGCTTCGGCAAAGCTTCACATTGTTGTGCTT 656
| | | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 589 C-GTGTCGTGCTGTGGTATATGGTCCAGAGGCTTCAGCAAAGCTTCAGGTTGTTGTGCTT 647
Query 657 GAGGGTGACTTTAACACTGAAGATGATGAAGACTGGACACAAGAAGAATTTGAAAGCCAT 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 648 GAGGGTGACTTTAACACTGAAGATGATGAAGACTGGACACAGGAAGAATTTGAAAGCCAT 707
Query 717 GTTGTAAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGAAGTGTATGTTACACTC 776
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 708 GTGGTGAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGATGTGTATGTTACTCTC 767
Query 777 AAGGAAGGGGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGA 836
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AAGGAAGGAGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGA 827
Query 837 AGTCGGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTGTTGTGATGGCATGCGTATC 896
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 828 AGTCGGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTATTGTGATGGCATGCGTATC 887
Query 897 CGTGAGGCCAAGACGGAAGCTTTTGTTGTTAAGGATCACAGGGGCGAATTGTACAAGAAG 956
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 888 CGTGAGGCGAAGACGGAAGCTTTTATTGTTAAGGATCACAGGGGCGAATTGTACAAGAAA 947
Query 957 CATTATCCACCTGCTCTGAATGATGATGTGTGGAGATTGGACAAGATCGGCAAGGATGGG 1016
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 CATTATCCACCTGCTTTGAATGATGATGTGTGGAGATTGGAGAAGATCGGCAAGGATGGG 1007
Query 1017 GCATTCCATAAAAAGCTTACTGCTGAAGGAATAAACACTGTAGAAGATTTTCTGAGAGTA 1076
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1008 GCATTCCATAAAAAGCTTAATGCTGAAGGAATAAATACTGTAGAAGATTTTCTGAGAATA 1067
Query 1077 ATGGTCAAGGATTCTCCAAAATTACGTACTATTCTTGGAAGCGGCATGTCAAACAAAATG 1136
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1068 ATGGTCAAGGATGCTCCAAAATTACGTTCTATTCTTGGAAGCGGCATGTCAAACAAAATG 1127
Query 1137 TGGGATGCACTAGTAGAGCACGCAAAGACGTGTGTCCAGAGCAGCAAGCTTTATATCTAC 1196
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1128 TGGGATGCACTAGTAGAGCACGCAAAGACGTGTGTCTTGAGCGGCAAGCTTTATATCTAC 1187
Query 1197 TATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTATGAGCTAAGCGGC 1256
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1188 TATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTACGAGCTAAGCGGC 1247
Query 1257 CTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGATAGCCAAAAGGTATAT 1316
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1248 CTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGACAGCCAAAAGGTATAT 1307
Query 1317 GTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGA 1376
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTTGATGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGA 1367
Query 1377 AAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTGAGTATTACTCACACTAATCTGGAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1368 AAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTGAGTATTACTCACACTGATCTGGAA 1427
Query 1437 AATTACTCGACTGCTGCCATTGACCATCCAATGCAGATGGTGGCAGGGCATTCGTCTTCA 1496
|||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1428 AATTACTCTACTGCCGCCATTGACCATCCAATGCAGATGG---CAGGGCATTCATCTTCA 1484
Query 1497 ATGCCGCCTAACCAGTCTCCAGTGCTTTCAGATTTTGCTATTGGAGGGTATGATCAAACT 1556
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 ATGCCGGCTAACCAGCCTCCAGTGCTTTCAGATTTTGCTATTGGAGGGTATGATCAAACT 1544
Query 1557 CTGGCAACAAGATATCATTCGCATCCCCAGCTTTTAAACTCCAACCCGCGAGCACAATTT 1616
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1545 CTGGCAACAAGATATCATTCGCAGCCCCAGCTTTTGAACTCCAACCCACGAGCACAATTT 1604
Query 1617 GAGGTTGCTTCATGCAGTACATCGCAAGACCAGTTCATGGGAAATCTACATCAAACTCAA 1676
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1605 GAGGTTGCTTCATGCAGTACAGCGCAAGACCAGTTCATGGGAAATCTACATCACACTCAA 1664
Query 1677 AGCACCATAAACAATCAACACATGAATGGCCTGGCTCTCGGTCCTTCACAATCATCCACA 1736
||||||||| |||||||| |||||||||| || |||||||||||| ||||| ||||||||
Sbjct 1665 AGCACCATACACAATCAAAACATGAATGGTCTTGCTCTCGGTCCTCCACAACCATCCACA 1724
Query 1737 AGCGGATACCAAAACATCAACCCTTCTTCTGTTCACCAGGCAGATCTCAACCATTTAGAA 1796
||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct 1725 AGCGGATACCAAAACATCAACTCTTCTACTGTTCACCAGGCAAATCTCAATCATTTAGAA 1784
Query 1797 GACTGGTCAAACCCCCGTGAGAGAGGACCAGATGATTTCTTCTCAGAGGAAGAGATCCGA 1856
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1785 GACTGGTCAAACCCCCGTGAGAGAGGACCAGAAGATTTCTTCTCAGAGGAAGAGATCCGA 1844
Query 1857 CTCAGAAGCCATGAAATGCTAGAGAGTGAAGACATGCAACAGTTCCTCCGCCTATTCAGC 1916
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1845 CTCAGAAGCCATGAAATGCTCGAGAGCGAAGACATGCAACAGTTCCTCCGCCTATTCAGC 1904
Query 1917 ATGGGAGGAGGAGGCAATGGCTCTGCAACACACTTGCCAGAAGATGGATATACTTTCCCA 1976
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 ATGGGAGGAGGAGGCAACGGCTCTGCAACACACTTGCCAGAAGATGGATATACTTTCCCA 1964
Query 1977 TCGTTTCTACACACGCCTATGCAAGGTTATGATGAAGACCGTGGTCGATCAGGCAGAGCT 2036
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TCGTTTCTACACACACCTATGCAAGGTTATGATGAAGACCGTGGTCGATCAGGCAGAGCT 2024
Query 2037 GTTGTTGGATGGCTTAAGATAAAAGCCGCAATGAGATGGGGGTTCTTCATCAGGAGGAAA 2096
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2025 GTTGTTGGATGGCTTAAGATAAAAGCAGCAATGAGATGGGGGTTCTTCATCAGGAGGAAA 2084
Query 2097 GCTGCTGAGAGGCGAGCACAAATTGTAGAGCTTGATGATGATGATGA--A-GATGGCGAA 2153
|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 2085 GCTGCTGAGAGGCGAGCACAGATTGTAGAGCTTGATGATGATGATGATGAAGATGGCGAA 2144
Query 2154 TAGTGTATAAAAGGAAGTGTACAGTTAGATTCAGTGGATCTGTGGATGTGTGTGTTTTAT 2213
||||||||||||||||||||||||||||| ||||||||| ||| ||| | | | ||
Sbjct 2145 TAGTGTATAAAAGGAAGTGTACAGTTAGAGTCAGTGGAT--GTG--TGT-T-T-T---AT 2194
Query 2214 GAAGCAGGAGACTTCTAATATGCTTGATTGATGATAACTCATTTAGACAGTAGCATTCTT 2273
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2195 GAAGCAGGAGACTTCTAATATGCTTGATTGATGA---CTCATTTAGACAGTAGCATTCTT 2251
Query 2274 AAGAACTGATTCTACAGTCTTAGATATGTGATTCAACAAGTAGAATTTCTGTATGGTCCT 2333
|||||||| |||||||||||||||||| ||||||||||||||| |||| ||| |||||||
Sbjct 2252 AAGAACTGGTTCTACAGTCTTAGATATATGATTCAACAAGTAGGATTTATGTCTGGTCCT 2311
Query 2334 TTTATTTGATG 2344
|| ||||||||
Sbjct 2312 TTAATTTGATG 2322
> Ahg492240 jgi|Araly1|492240|fgenesh2_kg.7__1673__AT4G25800.2
Length=2111
Score = 1155 bits (625), Expect = 0.0
Identities = 1015/1201 (85%), Gaps = 36/1201 (3%)
Strand=Plus/Plus
Query 249 AAGAGGAATTTGGATGGG-AACGATGATGATC-AGCCTGAGCGAAAACGCCCTGCTTTTG 306
|||||||| || || ||| |||| ||| || | ||||||||||||| || |||||| |||
Sbjct 141 AAGAGGAACTTAGA-GGGCAACGGTGACGA-CAAGCCTGAGCGAAAGCGTCCTGCTCTTG 198
Query 307 CTAGTGTGATTGTTGAGGCTCTGAAAGTAGATAGTTTGCAGAAGCTTTGCTCCTCTTTGG 366
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 199 CTAGTGTGATTGTTGAGGCTCTGAAAGTTGACAGTTTGCAGAAGCTTTGCTCGTCTTTGG 258
Query 367 AACCTATTCTCCGCCGAGTTGTCAGCGAGGAACTGGAACGTGCTTTAGCAAAACTAGGCC 426
||||||| ||||| |||||||| || |||||| ||||||||||||| |||||| ||| ||
Sbjct 259 AACCTATCCTCCGTCGAGTTGTTAGTGAGGAAGTGGAACGTGCTTTGGCAAAATTAGCCC 318
Query 427 CTGCTAGGCTTACTGGAAGTTC-GGGCTCTTCTCCAAAGCGAATT-GAAGGTCCGGATGG 484
|||||||||||| || |||||| ||| ||||||||||| |||||| | ||||| |||||
Sbjct 319 CTGCTAGGCTTATTGCAAGTTCTGGG-TCTTCTCCAAAACGAATTCG-AGGTCTAGATGG 376
Query 485 TCGGAAGTTACAGTTGCACTTCAAATCTAGGTTATCTCTCCCGTTATTCACTGGGGGGAA 544
||||| || ||| |||| ||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 377 CCGGAACTTGCAGCTGCATTTCAAGTCTAGGTTATCTCTCCCTTTATTCACT-GGAGGAA 435
Query 545 -AGTAGAAGGAGAGCAAGGTGCTG-TGATTCATGTTGTCTTGATTGATGCAAACACTGGC 602
||| ||||||||||||||||||| | || |||||||| |||||||||||||||||| ||
Sbjct 436 GAGTGGAAGGAGAGCAAGGTGCTGCT-ATCCATGTTGTATTGATTGATGCAAACACTCGC 494
Query 603 CGTGCTGTGGTA-TATGGTCCAGAGGCTTCGGC-AAAGCTTCACATTGTTGTGCTTGAGG 660
||| || | | | ||| ||| | ||||| | |||||| | |||||||||| | ||
Sbjct 495 CGTCCTCTAACAGT-TGGACCACAAGCTTC-CCTGAAGCTTGAGGTTGTTGTGCTCGGGG 552
Query 661 GTGACTTTAACACTGAAGATGATGAAGACTGGACACAAGAAGAATTTGAAAGCCATGTTG 720
|||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 553 GTGACTTTAACAATGAAGATGATGAAGATTGGACCCATGAAGAATTTGAAAGTCATGTTG 612
Query 721 TAAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGAAGTGTATGTTACACTCAAGG 780
||||||||||| |||||||||||| ||||| || ||||| ||| |||| |||||||
Sbjct 613 TAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACCGGAGATTTGTTTGTTGTTCTCAAGG 672
Query 781 AAGGGGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGAAGTC 840
||||||| || |||||||| ||| | |||||||||||||||||||| |||||||||||||
Sbjct 673 AAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGATAATTCGAGCTGGATTCGAAGTC 732
Query 841 GGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTG-TTGTGATGGCATGCGTATCCGT 899
| |||||| | ||||||||| |||| |||||| | ||||||||||| || || |||
Sbjct 733 GCAAGTTCAGGCTTGGTTTAAGGGTACCCTCTGGG-GACTGTGATGGCATACGCATACGT 791
Query 900 GAGGCCAAGACGGAAGCTTTTGT-TGTTAAGGATCACAGGGGCGAATTGTACAAGAAGCA 958
|| || ||||| ||||| ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 792 GAAGCAAAGACTGAAGC-TTTCTCTGTTAAAGATCACAGGGGCGAATTGTACAAGAAGCA 850
Query 959 TTATCCACCTGCTCTGAATGATGATGTGTGGAGATTGGACAAGATCGGCAAGGATGGGGC 1018
||||||||||||| |||||||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 851 TTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTGGAGAAGATTGGTAAAGATGGGGC 910
Query 1019 ATTCCATAAAAAGCTTACTGCTGAAGGAATAAACACTGTAGAAGATTTTCTGAGAGTAAT 1078
|||||||| | ||| || |||| ||||||| |||||| |||| ||||||||| |||
Sbjct 911 GTTCCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTGGAAGGCTTTCTGAGAA-AAT 969
Query 1079 -GGTCAAGGATTCTCCAAAATTACGTA-CTATTCTTGGAAGCGGCATGTCAAACAAAATG 1136
||||| ||||||| ||||| |||| | ||||||||||||| ||||||||||| || |||
Sbjct 970 TGGTCAGGGATTCTGCAAAACTACG-AGCTATTCTTGGAAGTGGCATGTCAAATAAGATG 1028
Query 1137 TGGGA-T-GCACTAGTAGAGCACGCAAAGACGTGTGTCC-AGAGCAGCAAGCTTTATATC 1193
||||| | || |||| ||||||||||| || ||||||| | ||| | ||||||||||||
Sbjct 1029 TGGGAATTGC--TAGTGGAGCACGCAAAAACATGTGTCCTA-AGCGGTAAGCTTTATATC 1085
Query 1194 TACTATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTATGAGCTAAGC 1253
|||||| |||| |||||||||||||| || |||||||||||||| ||||| ||| ||||
Sbjct 1086 TACTATACTGAAGATTCAAGGAATGTTGGCGTTGTGTTCAATAACATCTACGAGTTAAGT 1145
Query 1254 GGCCTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACT-TACTGATAGCCAAAAGGT 1312
||||| ||||||||||| |||||| | |||||||||||||| | |||| |||||||||||
Sbjct 1146 GGCCTCATTTCTGGAGACCAATACATATCTGCTGATTCACTCT-CTGAAAGCCAAAAGGT 1204
Query 1313 ATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAG-TCATAGAGTATG 1371
|||||| || || ||||||||||||||||||| ||| ||||||| || || | |||||||
Sbjct 1205 ATATGTGGATGGACTGGTGAAGAAAGCATATGGAAATTGGAACC-AGGTCGTGGAGTATG 1263
Query 1372 ATGGAAAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTG-AGTATTACTCACACTAAT 1430
| || |||||||||||| | || || ||||| |||||||| | |||| |||| ||| ||
Sbjct 1264 AAGGCAAATCTCTTTTAAATTTCAACCAGCCTGAGAGGTTGGA-TATTTCTCAGACTGAT 1322
Query 1431 C 1431
|
Sbjct 1323 C 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91721309960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5