BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57590.1
Length=2670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495856 jgi|Araly1|495856|fgenesh2_kg.8__1672__AT5G57590.1 3943 0.0
> Ahg495856 jgi|Araly1|495856|fgenesh2_kg.8__1672__AT5G57590.1
Length=2608
Score = 3943 bits (2135), Expect = 0.0
Identities = 2451/2601 (94%), Gaps = 32/2601 (1%)
Strand=Plus/Plus
Query 23 TTTCGAGCTAAACACTCCTCTCTCTCTCCGCCACTTCACTATCACA-TCCCACCTACCAA 81
|||||||||||||| ||| |||||||||||||||||||||| || ||||||| |||||
Sbjct 16 TTTCGAGCTAAACA---CTCGCTCTCTCCGCCACTTCACTATCCCATTCCCACCCACCAA 72
Query 82 CAATGATACCCGTAACCGCCACTCTTATCCGCCACCGTCTCCGGCACTTACGCCACCGCA 141
||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 73 CAATGATTCCCGTAACCGCCACTCTCATCCGCCACCGTCCCCGGCACTTACGCCACCGCA 132
Query 142 TTC-GATTCAAATCCA-C-C----TCT-GT--T--T-CTC-CT-T-TCCATTTACCACTC 185
|| ||||||| |||| | | ||| | | | ||| || | ||||||||||||||
Sbjct 133 -TCAGATTCAACTCCACCGCTGTTTCTCCTCCTCCTACTCACTCTATCCATTTACCACTC 191
Query 186 AACCACCCTACCTACTTAATTTGGTCAGCCAACACTTCTCTCGGCAAAACCCTCGTCTCT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AACCACCCTACCTACTTAATTTGGTCAGCCAACACTTCTCTCGGCAAAACCCTCGTCTCT 251
Query 246 ACAGGCATCGCCGCCTCTTTCCTCCTCCAGCAACCTTCATCTTCCGCCACAAAACTCCTC 305
|| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 252 ACCGGCATCGCCGCCTCTTTCCTCCTCCAACAACCTTCTTCTTCCGCCAAAAAACTCCTC 311
Query 306 TATTTGAAACCTATTCAGACCGGCTTCCCTTCCGATTCCGATTCTCGTTTCGTCTTCTCC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TATTTGAAACCTATTCAGACCGGCTTCCCTTCCGATTCCGATTCTCGTTTCGTCTTCTCC 371
Query 366 AAGCTCGATTCCCTCTCCCTCCGTCGCCAAATCCCTATTTCAATCTCCAACTCTGTCCTC 425
||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct 372 AAGCTCGATTCACTCTCCCTCCGTCGCCAAATCCCTCTTTCTATCTCAAACTCTGTTCTC 431
Query 426 CATTCTTCACTCCCCGCCGCAAAATCTCTGGGATTGAATGTTGAAGTCAGCGAGAGTGGG 485
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 432 CGTTCTTCACTCCCCGCCGCAGAATCTCTGGGATTGAATGTTGAAGTCAGCGAGAGTGGG 491
Query 486 ATGTGCT-CTTTGAATTTCCGGGATGAGAAAACCGTCACTGGAGCACCGGAACTTTTATG 544
||||| | |||||| |||||||| ||||| || ||||| || |||||||||||||| ||
Sbjct 492 ATGTG-TAATTTGAACTTCCGGGAGGAGAAGACTGTCACCGGCGCACCGGAACTTTTGTG 550
Query 545 CAAGACGTTGTATGCTTGGGAAGCAGCTATATCTCCGCATTTAGCTGCGGAGAGAGAAAA 604
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 551 CAAGACGTTGTATGCTTGGGAAGCAGCTATCTCTCCGCATTTAGCTGCGGAGAGGGAAAA 610
Query 605 CGCGACGGTCGAGGACTCCGTCGTGTTACAGATGATTGAAAAGTGTTTGAAGGAAGAGAT 664
| | ||| | || |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 611 CACTACGATTGAAGACTCCGTCGTGTTACGGATGATTGAAAAGTGTTTAAAGGAAGAGAT 670
Query 665 GGAATGTGG-AGTTAAAAGCGAGAAATCGGATTTACTATGTTTGGTGGAGACTGCCGGTG 723
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GGAGTGTGGAAG-TAAAAGCGAGAAATCGGATTTACTATGTTTGGTGGAGACTGCCGGTG 729
Query 724 GAGTTGCTAGTCCTGGTCCGTCGGGAACTCTTCAATGCGACCTCTACAGGCCTTTTAGAT 783
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GAGTTGCTAGTCCTGGACCGTCGGGAACTCTTCAATGCGACCTCTACAGGCCTTTTAGAT 789
Query 784 TACCTGGAATTCTTGTTGGAGATGGGCGGCTTGGTGGTATCTCAGGGACTATTGCAGCTT 843
| || ||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 790 TGCCCGGAATTCTTGTCGGAGATGGTCGACTCGGTGGTATCTCAGGGACTATTGCAGCTT 849
Query 844 ACGAGAGTTTAAAACTTCGAGGATATGATATTGCTGCTGTTGTTTTTGAAGATCATGGCC 903
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 850 ACGAGAGTTTAAAACTTCGTGGATACGATATTGCTGCTGTTGTTTTTGAAGATCATGGCC 909
Query 904 TTGTTAATGAAGTTCCATTAACTTCATATCTAAGGAATAAGGTGCCGGTGCTTGTGCTTC 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTGTTAATGAAGTTCCATTAACTTCATATCTAAGGAATAAGGTGCCGGTGCTTGTGCTTC 969
Query 964 CGCCTGTTCCCAAGGACCCTTCAGATGATCTTATTGAATGGTTTGTCGAATCCGATGGTG 1023
|||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 970 CGCCAATTCCCAAGGACCCTTCAGATGATCTAATAGAATGGTTTGTCGAATCCAATGGTG 1029
Query 1024 TTTTCAAAGCTTTGAAAGAAACAATGGTGTTAGCTAATTTGGAGAGATTGGAAAGATTAA 1083
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 1030 TTTTCAAAGCTTTGAAAGAAACAATGGTGTTAGCTTATTTGGGGAGATTAGAAAGATTAA 1089
Query 1084 ATGGCATGGCTAAGCTAGCAGGAGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTG 1143
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ACGGCATGGCCAAGCAAGCAGGAGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTG 1149
Query 1144 TGCATCAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACA 1203
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TACATGAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACA 1209
Query 1204 AGGCTTCCGATAACAGTTCTCTTAGCCAGCAATTTGATGCTTGTGCAAGCTGGTGGACAC 1263
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1210 AGGCTTCCGATAACAGTTCTCTTACCCAGCAATTTGATGCTTGTGCAAGCTGGTGGACAC 1269
Query 1264 AGGGGCCAGATCCTACTTTCCAGGCTGAGCTTGCTAGAGAAATGGGTTACACTGCTGCTA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 AGGGGCCAGATCCTACTTTCCAGGCTGAGCTTGCTAGAGAAATGGGTTACACTGCTGCTA 1329
Query 1324 GGTTTGGGCATGTTATGTTCCCTGAGAATGTATATGAACCTGCCTTGAAGTGCGCTGAGC 1383
|||| |||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 1330 GGTTCGGGCATGTTATGTTCCCTGAAAATGTATATGAACCTGCCTTAAAATGTGCTGAGC 1389
Query 1384 TGTTATTAGATGGAGTGGGAAAAGGCTGGGCTTCTCGAGTATACTTCTCGGATAATGGAT 1443
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1390 TCTTATTAGATGGAGTGGGAAAAGGCTGGGCTTCTCGAGTTTACTTCTCGGATAATGGAT 1449
Query 1444 CCACAGCAATCGAAATTGCCTTGAAGATGGCATTTCGTAAGTTTTGTGTCGATCATAATT 1503
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1450 CCACAGCAATCGAAATTGCCTTGAAGATGGCATTTCGTAGGTTTTGTGTCGATCATGATT 1509
Query 1504 TTTGCGAGGCTACAGAAGAGGAAAAGCATATTGTGGTTAAGGTCATAGCTCTTCGGGGGT 1563
|||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1510 TTTGCGAGAAAAGGGAAGAGAAAAAGCATATTGTGGTTAAGGTCCTAGCTCTTCGGGGGT 1569
Query 1564 CTTACCATGGAGATACTTTAGGAGCAATGGAAGCACAAGCACCATCACCTTATACAGGCT 1623
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1570 CTTACCATGGGGATACTTTAGGAGCGATGGAAGCACAAGCACCATCGCCTTATACAGGCT 1629
Query 1624 TTCTCCAGCAGCCGTGGTATACTGGAAGAGGCTTGTTTCTGGATCCTCCTACTGTCTTTC 1683
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1630 TTCTCCAGCAGCCGTGGTATACTGGAAGAGGCCTGTTTCTGGATCCTCCTACTGTCTTTC 1689
Query 1684 TCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGAAATAGCCCCAGAA- 1742
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TCTCCAATGGAGCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGAAATAGCCCCAGAAG 1749
Query 1743 --TATGGAACCTTCACCAGCCGTGATGAGATTTTTGACAAGAGTAGAGACGCATCAACTC 1800
|||||||||||||||| ||||||||| ||||||||| |||| ||||||||| ||||||
Sbjct 1750 AATATGGAACCTTCACCATCCGTGATGAAATTTTTGACGAGAGCAGAGACGCAACAACTC 1809
Query 1801 TTGCAAGAATATATTCGGCCTATTTATC-GAAGCATTTACAAGAGCATTCTGGAGTTAGG 1859
|||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||
Sbjct 1810 TTGCAAGAATATATTCAGCCTATGTATCAGA-GCATTTACAAGAGCATTCTGGAGTTAGG 1868
Query 1860 CAATCTGCCCATGTTGGAGCACTGATAATAGAACCAGTAATTCATGGTGCTGGGGGAATG 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 CAATCTGCCCATGTTGGAGCACTGATAATAGAACCAGTAATTCATGGTGCTGGGGGAATG 1928
Query 1920 CATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATT 1979
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1929 CACATGGTTGATCCGCTTTTCCAACGAGTTTTGGTCAATGAGTGCCGGAATAGAAAAATT 1988
Query 1980 CCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGACTACTACT 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1989 CCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGACTACTGCT 2048
Query 2040 GAACTTCTCGGTTGCAAACCGGACATAGCGTGCTTTGCCAAATTGTTGACTGGTGGAATG 2099
|| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2049 GATCTTCTCGACTGCAAACCGGACATAGCTTGCTTCGCCAAATTGTTGACTGGTGGAATG 2108
Query 2100 GTTCCTTTGGCTGTCACTCTTGCCACAGATGCTGTATTCGATTCATTTTCTGGAGATTCT 2159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 GTTCCTTTGGCTGTCACTCTTGCCACAGATGCTGTATTCGATTCATTTTCTGGAGATTCC 2168
Query 2160 AAGCTTAAAGCCTTGCTTCATGGTCACTCATACTCAGCTCATGCTATGGGTTGCGCAACA 2219
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2169 AAGCTTAAAGCCTTGCTTCATGGTCACTCATACTCAGCACATGCTATGGGTTGCGCAACA 2228
Query 2220 GCCGCCAAAGCCATCCAATGGTTCAAAGATCCAGAGACTAACCACAACATCACTTCACAA 2279
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2229 GCGGCCAAAGCAATCCAATGGTTCAAAGATCCAGAGACTAACCATAACATCACTTCACAA 2288
Query 2280 GGAAAAACTTTAAGAGAGCTGTGGGACGAAGAACTGGTGCAACAAATATCATCTCACTCT 2339
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2289 GGAAAAACCTTAAGAGAGCTGTGGGACGAAGAACTGGTGCAACAAATATCATTTCACTCC 2348
Query 2340 GCGGTTCAAAGGGTGGTTGTAATAGGAACCCTTTTCGCTCTAGAACTAAAAGCAGATGCT 2399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 GCGGTTCAAAGGGTGGTTGTAATAGGAACCCTTTTCGCTCTAGAACTAAAAGCAGATGCT 2408
Query 2400 TCCAATTCAGGGTATGCTTCGTTGTATGCAAAGTCTCTTCTA-ATAATGCTTCGGGAAGA 2458
|||||||| ||||||||||||||||||||||||||||||||| | | |||| || |||||
Sbjct 2409 TCCAATTCCGGGTATGCTTCGTTGTATGCAAAGTCTCTTCTAGAGA-TGCTCCGAGAAGA 2467
Query 2459 CGGTATCTTTACCCGGCCTCTTGGAAACGTTATCTATCTCATGTGTGGCCCTTGCACCTC 2518
||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 2468 CGGAATCTTCACGCGCCCTCTCGGCAACGTTATTTATCTCATGTGTGGCCCTTGCACCTC 2527
Query 2519 GCCGGAAATTTGCCGCCGGTTGCTCACGAAGCTCTACAAAAGGCTCGGAGAATTCAATAG 2578
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 2528 GCCGGAAATTTGCCGCCGGTTACTCACTAAGCTCTACAAAAGGCTCGGAGAATTCAACAG 2587
Query 2579 AACATGAAACCCAAAACTCTC 2599
|||||||||||||||||||||
Sbjct 2588 AACATGAAACCCAAAACTCTC 2608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100710607780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5