BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57620.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950453 jgi|Araly1|950453|scaffold_802340.1 1759 0.0
> Ahg950453 jgi|Araly1|950453|scaffold_802340.1
Length=1106
Score = 1759 bits (952), Expect = 0.0
Identities = 1056/1106 (95%), Gaps = 7/1106 (1%)
Strand=Plus/Plus
Query 11 CATCACACCAAACATAATTAACACTTGGAAG-AGAACAACAACGACAAGATCAAGAAAAG 69
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 1 CATCACACCAAACATAATTAACACTTGGAAGAACAACAACAACGACAAGATCGAGAAAAG 60
Query 70 ACAAAGATTTGTAAGAAAATGGGAAGAGCTCCATGCTGCGACAAGGCAAACGTGAAGAAA 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAAGATTTGTAAGAAAATGGGAAGAGCTCCATGCTGCGACAAGGCAAACGTGAAGAAA 120
Query 130 GGACCATGGTCACCGGAAGAAGATGTGAAGCTCAAGGATTACATCGACAAATATGGCACT 189
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGCCATGGTCGCCGGAAGAAGATGTGAAGCTCAAGGATTACATCGACAAATATGGCACT 180
Query 190 GGTGGCAACTGGATCGCACTGCCTCAGAAAATTGGGCTGAAGAGATGTGGTAAGAGTTGC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGCAACTGGATCGCACTGCCTCAGAAAATTGGGCTGAAGAGATGTGGTAAGAGTTGC 240
Query 250 AGACTGAGATGGCTTAATTACTTAAGACCAAACATCAAACATGGTGGTTTTTCTGAGGAA 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGACTGAGATGGCTTAATTACTTAAGACCAAACATCAAACATGGTGGTTTTTCTGAGGAG 300
Query 310 GAAGATAGAATCATCTTGAGTCTCTACATTAGCATTGGAAGCCGGTGGTCCATAATTGCA 369
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGATAGTATCATCTTGAGTCTCTACATTAGCATTGGAAGCCGGTGGTCCATAATTGCA 360
Query 370 GCTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAATTATTGGAACACAAAACTGAAG 429
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCTCAGCTTCCTGGAAGGACTGACAATGATATCAAGAATTACTGGAACACAAAACTGAAG 420
Query 430 AAGAAACTTCTAGGAAGACAGAAACAAATGAATCGTCAAGACTCCATAACCGATTCTACT 489
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 AAGAAACTTCTTGGAAGACAGAAACAAATGAATCGTCAAGACTCAATAACCGATTCTACC 480
Query 490 GAGAACAACCTCAGCAACAATAACAACAATAAGAGTCCTCAGAATCTGAGCAATTCGGCA 549
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 GAGAACAACCTCAATAACAATAACCACAATAAGAGTCCTCAGAATCTGAGCAATTCGGCA 540
Query 550 CTGGAGAGGCTCCAGCTTCACATGCAGCTTCAGAATCTACAGAGCCCTTTCTCTAGTTTC 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGGAGAGGCTCCAGCTTCACATGCAGCTTCAGAATCTACAGAGCCCTTTCTCTAGTTTC 600
Query 610 TACAACAACCCTATCTTGTGGCCCAAGCTTCATCCATTGCTCCAGAGCACTACAACTA-- 667
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 601 TACAACAACCCTATCTTGTGGCCCAAGCTTCATCCATTGCTGCAGAGTACTACAACTACT 660
Query 668 ---A-TCAAAACCCTAAGCTTGCATCTCAAGAAAGCTTCCACCCTTTAGGAGTTAACGTT 723
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CCTAATCAAAACCCCAAGCTTGCATCTCAAGAAAGCTTCCACCCCCTAGGAGTTAACGTT 720
Query 724 GATCATCAGCACAACAATACCAAGCTAGCTCAGATAAACAATGGAGCCTCTTCTCTCTAT 783
||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||
Sbjct 721 GATCATCAGCACAACAATATGAAGCTAGCTGAGATCAACAATGGAGTTTCTTCTCTCTAT 780
Query 784 TCGGAGAACGTAGAGCAATCCCAAAACCCTGCTCATGAATTTCAACCTAATTTCGGTTTT 843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TCGGAGAACGTAGAGCAATCCCAAAACCCTGCTCACGAATTTCAACCTAATTTCGGTTTT 840
Query 844 TCACAGGACCTTCGATTAGATAATCATAACATGGACTTTATGAACAGAGGGGTTTCTAAA 903
|| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 841 TCGCAGGACCTTCGAATAGATAATCATAACATGGACCTTATGAACAGAGGTGTTTCGAAG 900
Query 904 GAACTGTTTCAAGTGGGCAACGAGTTTGAGCTAACGAACGGTTCGAGTTGGTGGTCAGAG 963
||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 901 GAATTGTTTCAAGTGGGCAACGAATTTGAGCTAACGAACAGTTCGAGTTGGTGGTCAGAG 960
Query 964 GAAGTGGAACTAGAGAGGAAAACGACGTCGTCGAGTTCTTGGGGGTCAGCTTCTGTGCTT 1023
|||||||| |||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 961 GAAGTGGAGGTAGAGAGGAAAACGACGTCGTCAAGTTCTTGGGGATCAGCTTCGGTTCTT 1020
Query 1024 GATCAGACAACTGAGGGAATGGTTATGCTTCAAGATTACGCTCAGATGAGCTACCACAGT 1083
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATCAGACGACTGAAGGAATGGTTATGCTTCAAGATTACGCTCAGATGAGCTACCACAGT 1080
Query 1084 GTTTAATAAGTTATATCATGCATATA 1109
|||| |||||||||||||||||||||
Sbjct 1081 GTTTGATAAGTTATATCATGCATATA 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5