BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57625.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495859 jgi|Araly1|495859|fgenesh2_kg.8__1675__AT5G57625.1 1297 0.0
Ahg492241 jgi|Araly1|492241|fgenesh2_kg.7__1674__AT4G25790.1 368 4e-101
> Ahg495859 jgi|Araly1|495859|fgenesh2_kg.8__1675__AT5G57625.1
Length=845
Score = 1297 bits (702), Expect = 0.0
Identities = 802/850 (94%), Gaps = 8/850 (1%)
Strand=Plus/Plus
Query 1 ACCACCCACAAAGCCATGGCGACCACTTCATCGACAAAACAAGTCATTGTCTTCACAATT 60
|||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1 ACCACCCACAAAACCATGGCGACCACTTCCTCGACGACACAAGTCATTGTCTTCACAATT 60
Query 61 TCCCTTCTCTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCACCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCTTCTCTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCACCG 120
Query 121 GTTACCCCTACCCCTTACGTTCCTAAGCCACG-GTACCCACTTCCGAGCCCGAGCCCCAA 179
|||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||
Sbjct 121 GTTACCCCTACCCCTTACGTCCCTAAGCCACGAGT-CCCACTTCCAAGCCCGAGCCCCAA 179
Query 180 GCCTGTTTATCGACCACCTACTACCCCTAGTCTACCCGCTGGCTCAATCGCTAGACTATT 239
|||||| ||||| || |||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 180 GCCTGTCTATCGGCCTCCTACTACACCTACTCTACCCGCTGGCTCAATCGCTAGACTGTT 239
Query 240 CCTTGATCCACATAACGCTCTTCGGTCCGGACTAGGTTTGCCTCCATTGATTTGGGACGG 299
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 240 CCTTGATCCACATAACGCTCTTCGGTCCAGACTAGGTTTGTATCCATTGGTTTGGGACGG 299
Query 300 TAAACTAGCGAGCTACGCAACA-TGGTGGGCTAACCAGAGGCGTTACGACTGCTCCTTAA 358
|| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 300 CAAGCTAGCGAGCTACGCG-CAATGGTGGGCTAACCAGAGGCGTTACGACTGCTCTTTAA 358
Query 359 CCCATTCCACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTCGAGCTGGGCAC 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTCGAGCTGGGCAC 418
Query 419 CAGGTTTCGCGGTGCAGTCATGGATCGTTGAAGGAAGGTCATACAACCACAACACCAACT 478
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 419 CAGGTTTCGCGGTGCAGTCATGGATCGTTGAAGGAAGGTCTTACAACTACAACACCAACT 478
Query 479 CGTGTGACGGAAGTGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGGGACACCAAAA 538
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CCTGTGACGGAAGTGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGTGACACCAAAA 538
Query 539 GGCTCGGATGCGCACGTGTGGTGTGTGAGAACGGTGCCGGAGTTTTCATCACTTGTAACT 598
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 539 GGCTCGGATGCGCACGTGTGGTTTGTGAGAACGGCGCCGGAGTTTTCATCACTTGTAACT 598
Query 599 ACGACCCACCGGGTAACTACGTTGGCGAGAAGCCATACTaaaaaaaCAAAACACATTAAA 658
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||
Sbjct 599 ACGACCCACCGGGTAACTACGTTGGCGAGAGGCCTTACTAAAAAAACAAA-CACGTTAAA 657
Query 659 CGGGGTTTTTGTTTGGTATTTGATTTCATTTAATATCTTTTGTATCTGTTTTCGTTATAT 718
|||| ||||||||||||| ||||||||||||||| |||||| ||| ||||||| |||||
Sbjct 658 CGGG-TTTTTGTTTGGTACTTGATTTCATTTAATTTCTTTTCTATATGTTTTCAATATAT 716
Query 719 CTTCGTGAAATTAAAATTTCCGACAAATCTAATTTGTATGTATCATTGTATGTTGTTGTT 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 717 CTTCGTGAAATTAAAATTTCCGACAGATCTAATTTGTATGTATCATTGTATGTTGTTGTT 776
Query 779 TCCAATGTCCTCTCGGTCATGTCCTCAAAATTTTGTTGAGTGGCCT-ACTTATTTAAACA 837
||| ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 777 TCCGATGTCCTGTCGGTCATGTCCTCAAAATTTTGTTGAGTGGCCTTA-TTATGTAAACA 835
Query 838 TCGTAAAACA 847
||||||||||
Sbjct 836 TCGTAAAACA 845
> Ahg492241 jgi|Araly1|492241|fgenesh2_kg.7__1674__AT4G25790.1
Length=770
Score = 368 bits (199), Expect = 4e-101
Identities = 343/411 (83%), Gaps = 16/411 (4%)
Strand=Plus/Plus
Query 237 ATTCCTTGATCCACATAACGCTCTTCG-GTCCGGA-CTAGGTTTGCCTCCATTGATTTGG 294
||| ||||||||||||||| || | || | | | |||||| ||||||||||| | |||
Sbjct 272 ATTTCTTGATCCACATAACACTGTCCGAG-GC-AATCTAGGTCTGCCTCCATTGGTGTGG 329
Query 295 GACGGTAAA-CTAGCGAGCTACGCAACATGGTGGGCTAACCAGAGGCGTTACGACTGCTC 353
||| ||||| | || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 330 GAC-GTAAAGATCGCAAGCTATGCAACATGGTGGGCTAACCAGAGGCGATACGACTGCTC 388
Query 354 CTTAACCCATTCCACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTC-GAGCT 412
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 389 CTTAACCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGA-CT 447
Query 413 GGGCACC-AGGTTTCGCGGTGCAGTCATGGATCGTTGAAGG--AAGGTCATACAACCACA 469
|| | | |||||| ||| ||||||||| ||| || || ||| || ||||||||||
Sbjct 448 TTACATCGAC-TTTCGCAGTGGAGTCATGGACCGTGGA-GGCTAAG-TCCTACAACCACA 504
Query 470 ACACCAACTCGTGTGACGGA-AGTGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGG 528
|||||| ||||||| ||| | ||| ||||||||||||||||||||||| ||||||||
Sbjct 505 TGACCAACACGTGTGAAGGAGA-TGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGT 563
Query 529 GACACCAAAAGGCTCGGATGCGCACGTGTGGTGTGTGAGAACGGTGCCGGAGTTTTCATC 588
|| |||| | || || ||||| || || || || |||||||| || || |||||||||
Sbjct 564 GAAACCAGGCGCCTAGGTTGCGCTCGAGTTGTCTGCGAGAACGGCGCAGGTGTTTTCATC 623
Query 589 ACTTGTAACTACGACCCACCGGGTAACTACGTTGGCGAGAAGCCATACTaa 639
||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 624 ACTTGCAACTACGACCCTCCGGGTAACTACGTTGGGGAGAAGCCTTACTAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5