BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57670.2
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495864 jgi|Araly1|495864|fgenesh2_kg.8__1680__AT5G57670.2 2820 0.0
> Ahg495864 jgi|Araly1|495864|fgenesh2_kg.8__1680__AT5G57670.2
Length=1905
Score = 2820 bits (1527), Expect = 0.0
Identities = 1729/1826 (95%), Gaps = 15/1826 (1%)
Strand=Plus/Plus
Query 1 GAATCATTGTGTTCTCAAAAATTCCGACCTTAGAGTGAGACAAGTGA-AAAAGGGCCAAT 59
||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||
Sbjct 1 GAATCATTGTGTTCTCAAAAATTCCGAACTTAGAGTGAGATAAGGGAGCAAAGGGCCAAT 60
Query 60 ACAAATGATATCTTGTTCAGAAGAAGGTAGTAACAAGATCCTTGTGGCGATCTCGTTGGA 119
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACAAATGATATCTTGTTCAGACGAAGGTAGTAACAAGATCCTTGTGGCAATCTCGTTGGA 120
Query 120 CCGTGACGAGAGCCAAAATGTTCTATCTTGGGCCATCAATGTTCTTGCTAAACCAAGTGA 179
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCAACGAGAGCCAAAATGTTCTATCTTGGGCCATCAATGTTCTTGCTAAACCAAGTGA 180
Query 180 CACCGTTGTGGCTCTTCATCTTCTTGTTGGTGAAGAACCGAGAAAATTGCCAATGAAGAA 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACCATTGTGGCTCTTCATCTTCTTGTTGGTGAAGAACCGAGAAAATTGCCAATGAAGAA 240
Query 240 GAAGAAGAGAACTCAGATTCGACATGCCAAAGCTCATGTTATCTCCATGCTTGGAGAGTT 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GAAGAAGAGAACTCAGATTCGACATGCCAAAGCTCACGTTATCTCCATGCTTGGAGAGTT 300
Query 300 CGCTTACACTTGCTGCCACAACCAGGTGAATTTGGAAGCCAAGGTAGGGTTTAGCTCAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CGCTTACACTTGCTGCCACAACCAGGTGAATTTGGAAGCCAAGGTAGGGTTTACCTCAAA 360
Query 360 CATTGGAAGAGGACTAATCGATGAAGTCAAATCCATTTCTGCTCATTATCTTGTTCTTTC 419
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 CATTGGAAGAGGACTAATCAATGAAGTCAAATCGATTTCTGCTCATTATCTTGTTCTTTC 420
Query 420 TCGACCAACAACCCACGAGTTTAGGATATGGAATGACATCAAAAGATATGTCTCCGACTT 479
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCGACCAACAACCCACGAATTCAGGATATGGAATGACATCACAAGATATGTCTCCGACTT 480
Query 480 TGCTCCATCAAGTTGCTCTGTTGTTTTAGTCGGAAACCAAAGAAAACCGCATAAAGATTG 539
||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 481 TGCTCCATCAAGTTGCTCTGTTGTTCTAGTAGGAAATCAAAGAAAACCGCATAAAGATTG 540
Query 540 TTACTCTGACTCCGCGATTTCTCTAGACATAAATAGTGAGAAGTATTCACCACGTAGTGT 599
||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||
Sbjct 541 TTACTCTGACTCCGCGATTTCTCGAGACATAAAGAGTGAGAAGTATTCACCGCGCAGTGT 600
Query 600 ACTAAACACTTTATCAAGAGATTCACTTAGCTCTTCAGGCGATGATGCTTCAAGCTTCAA 659
||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 601 ACTAAACGCTTTATCAAGAGATTCACTTAGCTCTTCGGGAGATGATGCTTCAAGCTTCAA 660
Query 660 TGGTTCAATGGTCTCTTCTAGCTTCGCTTCGCCTTCAGACAAACCGAAGCATAAGTCAAT 719
||||||||||| |||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 661 TGGTTCAATGGCCTCTTCTAGCTTCGCTTCGCCTTCAGGGAAACCAAAACATAAGCCAAT 720
Query 720 CTCTCCTTACAAATTCATATCTTCTCTTATCATGAATTCTCCTCTGAGGAAATGGAGAGG 779
||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 GTCTCCATACAGATTCATATCTTCTCTTATCATGAACTCTCCTCTGAGGAAATGGAGAGG 780
Query 780 AAGTGAGACTAAGAACAAGCCCAAACCTCAGCCTCTAATTCAATGCTTCACTTACAACGA 839
||| |||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 781 AAGCGAGACTAAGAGCAAGCTTAAACCTCAACCTTTAATTCAATGCTTCACTTACAACGA 840
Query 840 GATTTCAAAGGCCACAAATGATTTTCACCAAGGGAATATAGTAGGCATAGGAGGCTACTC 899
||||||||||||||| |||| |||| | |||| ||| || ||||||||||||||||||||
Sbjct 841 GATTTCAAAGGCCACGAATGGTTTTGATCAAGAGAACATTGTAGGCATAGGAGGCTACTC 900
Query 900 TGAAGTGTACAGAGGAGATTTATGGGATGGAAGAAGAATAGCAGTGAAGAGATTAGCCAA 959
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 901 TGAAGTGTACAGAGGAGATTTATGGGATGGAAGAAGAATCGCAGTGAAGAGACTAGCCAA 960
Query 960 GGAGAGTGGTGACATGAACAAGGAGAAAGAGTTTCTTACGGAACTTGGCATCATAAGTCA 1019
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 961 GGAGAGTGGTGACATGAACAAGGAGAAAGAGTTTCTTACAGAACTCGGCATCATTAGTCA 1020
Query 1020 TGTCTCTCATCCCAACACTGCTCTTCTCTTAGGTTGTTGTGTTGAGAAAGGTCTTTATCT 1079
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1021 TGTCTCTCATCCCAACACTGCTCTTCTCTTAGGTTGTTGTGTTGAGAGAGGTCTCTATCT 1080
Query 1080 TGTCTTCAGATTCTCCGAGAATGGAACCTTGTACTCTGCGCTGCACGAGAATGAGAATGG 1139
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1081 TGTCTTCAGATTCTCCGAGAATGGAACCTTGTACTCTGCGTTGCACGAGAAGGAGAATGG 1140
Query 1140 GTCGTTAGATTGGCCTGTACGGTACAAAATTGCGGTTGGAGTTGCTCGAGGGCTTCATTA 1199
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GTCGTTAGATTGGCCTATACGATACAAAATTGCGGTTGGAGTTGCTCGAGGGCTTCACTA 1200
Query 1200 TCTTCACAAACGCTGCAACCACCGGATCATTCACCGCGACATTAAATCTTCCAATGTTTT 1259
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 TCTTCACAAACGCTGCAACCACCGGATCATTCACCGCGACATAAAATCTTCCAATGTTTT 1260
Query 1260 ACTTGGACCTGATTACGAACCGCAGATAACTGATTTTGGATTGGCCAAATGGTTGCCTAA 1319
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 ACTTGGACCTGATTATGAACCGCAGATAACTGATTTTGGATTGGCGAAATGGTTGCCTAA 1320
Query 1320 CAAATGGACTCACCATGCGGTTATACCGGTTGAAGGAACGTTTGGTTATCTAGCTCCAGA 1379
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1321 CAAATGGACTCACCATGCGGTTATACCAGTTGAAGGAACGTTTGGTTATCTAGCACCAGA 1380
Query 1380 GTCCTTAATGCAAGGAACCA-TCGACGAGAAAACCGACATCTACGCATTCGGCATTCTCC 1438
|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1381 GTCCTTAATGCAAGGAAC-AGTCGACGAGAAAACCGACATCTACGCATTCGGTATTCTCC 1439
Query 1439 T-TCTAGAGATCATAACTGGTCGAAGACCGGTTAATCCCACTCAGAAACACATTCTCTTA 1497
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TAT-TAGAGATCATAACTGGACGAAGACCGGTTAATCCCACTCAGAAACACATTCTCTTA 1498
Query 1498 TGGGCAAAGCCGGCGATGGAGACAGGTAACACAAGTGAGTTGGTTGATCCGAAATTGCAA 1557
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1499 TGGGCAAAGCCGGCGATGGAGACAGGTAACACAAGAGAGTTGGTTGATTCGAAATTGCAA 1558
Query 1558 GATAAGTACGACGACCAACAGATGAACAAGCT-AGTCCTTACAGCTTCACATTGTGTTCA 1616
|||||||| ||||| ||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1559 GATAAGTATGACGATCAACAGATGAACAGGCTTA-TCCTTACAGCTTCACATTGTGTTCA 1617
Query 1617 ACAATCTCCGATATTACGACCAACCATGACTCAGGTATTGGAGTTGCTTACAAATGGGAA 1676
|||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1618 ACAATCACCCATATTACGACCAACCATGACTCAGGTACTGGAGTTGCTCACAAATGGGAA 1677
Query 1677 CGAGGCTGAGATTGCAAAGAGCTGGAGAATGCCTAAGGATatgactaatgac---gatga 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1678 CGAGGCTGAGATTGCAAAGAGCTGGAGAATGCCTAAGGATATGACTAATGACCATGATGA 1737
Query 1734 t-----gataataatgaatgggatgattattctatgattttcggatatgatgTTCCTTCA 1788
| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1738 TATTTTGATAATAATGGATGGGATGACTATTCTATGATTTTCGGATACGATGTTCCTTCG 1797
Query 1789 GATTCTTCtttttaatatttttgttt 1814
||||||||||||| ||||||||||||
Sbjct 1798 GATTCTTCTTTTTGATATTTTTGTTT 1823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72676187460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5