BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57685.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495865 jgi|Araly1|495865|fgenesh2_kg.8__1681__AT5G57685.1 1061 0.0
> Ahg495865 jgi|Araly1|495865|fgenesh2_kg.8__1681__AT5G57685.1
Length=831
Score = 1061 bits (574), Expect = 0.0
Identities = 770/856 (90%), Gaps = 47/856 (5%)
Strand=Plus/Plus
Query 21 aaaaaaaaaaaactcaaaactcaaaaccatc-tttgtgaaaaaaaaaTGGAAGGAAGACA 79
||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 1 AAAAAAAAAAAACACAAAACTCAAAACCATCTTTTTTGAAAAAAATATGGAAGGAAGACA 60
Query 80 ATATTACCCTCCGAGAGAAAACGTTGAAGGAAACAGAACCACCATGGGAGGAGGACCTCA 139
|||||||||||||||||||||||| || |||||||||||| |||| | |||||||||||
Sbjct 61 ATATTACCCTCCGAGAGAAAACGTCGACGGAAACAGAACCGCCAT--G-GGAGGACCTCA 117
Query 140 CTCACCGTGGCATTCACCGGTTCCTTATCTCTTTGGTGGTTTAGCAGCGATGCTTGGTCT 199
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 118 CTCGCCGTGGCATTCACCGGTTCCTTATCTTTTTGGTGGTTTAGCGGCGATGCTTGGTCT 177
Query 200 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCTTACTGGCGTCTCTCCGGTTATCTAGA 259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCGTACTGGCGTCTCTCCGGTTATCTAGA 237
Query 260 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGTCGGAGATGTGAAACCTGACAA 319
|||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| ||
Sbjct 238 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGCCGGAGACGTCAAAACTGA-AA 296
Query 320 AA-CGGCGGTGAAGCCTGTAGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 378
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGCAGCGGTGAAGCCTGTTGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 356
Query 379 TCAAACCTACTTACTTAGCAACGCCGTCGGTAAAAACGTGTACTTGTGACGATGATGACG 438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 TCAAACCTACTTACTTAGCAACGCCGGCGGTAAAAACGTGTACTTGTGACGATGATGACG 416
Query 439 ATG-A-A-GATGATGACGTGGAGGG-AAGTGATCAGGTGGTGCCGCGGAGTAGTGAAAGT 494
||| | | ||||||||||||||||| || |||||||||||||| |||||||| |||||||
Sbjct 417 ATGGAGATGATGATGACGTGGAGGGTAA-TGATCAGGTGGTGCGGCGGAGTATTGAAAGT 475
Query 495 AACGGTGAGACACATTGACAAAACCAGAGGAAGGGAAGAGAAAAACAGAGGATCGTCTTA 554
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 476 AACGGTGAGACACATTGACAAAACCAGAGGAAAGGAAGAGAAAAACAGTGGATCGTCT-A 534
Query 555 TT-GTGAACAGTTCTGAAGAACTGTTTGCAGCATCTGACCCGGTTGCGTCGGGTATTCGG 613
|| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 535 TTTGTGAACAGTTTTGAAGAATTGTTTGCAGCTTCTGACCCGGTTGCGTCGGGTATTCGG 594
Query 614 GTTGGATCATAACTCTACTTGATGATGAG--T-AATA-T--T--GGAA----AAAATT-G 660
|| || ||| |||||||||||||| |||| | |||| | | || |||||| |
Sbjct 595 GTCGGGTCAGAACTCTACTTGATGTTGAGACTTAATAATCCTACGGTGGTGGAAAATTTG 654
Query 661 GAATTGGGATTGAATTATTAGGAGTTG-TTCTGATCAATGATGTATTTAAAAAATCTTAG 719
|||||||||||| ||||||||||| || || ||||||||||||||||||||| ||| ||
Sbjct 655 GAATTGGGATTGGATTATTAGGAGGTGCTT-TGATCAATGATGTATTTAAAA--TCTCAG 711
Query 720 CTTTTGCCTTTTGCATCGTTAATTCGttttttttttttttGTAAGTTTTGTGCCATATCT 779
|||||||||||| | || || ||| || ||||||| ||| ||||||||
Sbjct 712 CTTTTGCCTTTT---T--TT--TT--TTTAGTT-------GTAAGTTATGTTCCATATCT 755
Query 780 AGGTCATGATGAGGGATAAAA-TGTAAATTTCTGAGACTTTGAATGTGAAATTTGTGATT 838
|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 756 AGGTCATGATGAGGGAAAAAAATGTAAATTTCTGAGACTTTGAATGGGAAATTTGTGATT 815
Query 839 TATGGAATTGAGAATG 854
||||||||||||||||
Sbjct 816 TATGGAATTGAGAATG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5