BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57690.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332060 jgi|Araly1|332060|fgenesh1_pm.C_scaffold_8001403 2141 0.0
> Ahg332060 jgi|Araly1|332060|fgenesh1_pm.C_scaffold_8001403
Length=1494
Score = 2141 bits (1159), Expect = 0.0
Identities = 1257/1305 (96%), Gaps = 3/1305 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCACCGTCGATTGGTGATTCATTGACGGCGAGGATGATTCCACGACATTCATCT 60
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAATCACCATCGATTGGTGATTCAGTGACGGCGAGGATGATTCCACGACATTCTTCT 60
Query 61 CTCGACTCATTCGGAGCAATGAAAGTCTCTTTATTGGTCAATCTCGCGAGCATAAGAGTC 120
||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 CTCGATTCGTTCGGAGCAATGAAAGTCTCCTTATTGGTCAATCTCGCAAGCATAAGAGTC 120
Query 121 TCTAAAGCAGAGCTTCGTCAAAGAGTTATGCTTCCTCAATATCTCCGCATTGCAATACGC 180
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct 121 TCTAAAGCAGAGCTTCGTCAAAGAGTTATGCTTCCTAAATACCTCCGCATCGCAATCCGC 180
Query 181 GATTGCATTCTTCGTAAAGACGATTCCTTCGACGCTTCCTCCTCTGTAGCACCACCGTTA 240
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 181 GATTGCATTCTCCGTAAAGACGATTCCTTCGCCGCTTCCTCCTCTGTAGCACCGCCGTTA 240
Query 241 GAAAACAACGCGTTGACGCCTGAAGTTCCTTTGATGGTCTTCGTTAATCCCAAAAGCGGT 300
| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 241 G---ACAACGCTTTGACGCCTGAGGTTCCTCTGATGGTCTTCGTTAATCCCAAAAGCGGT 297
Query 301 GGTCGTCAAGGTCCACTCATTAAAGAACGTCTCCAGAATCTTATTAGCGAAGAACAGGTG 360
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 298 GGTCGTCAAGGTCCTCTCATCAAGGAACGTCTCCAGAATCTTATTAGCGAAGAACAGGTG 357
Query 361 TATGATTTAACGGAAGTGAAGCCTAATGAGTTTATTCGATATGGATTGGGATGCTTAGAG 420
| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 TTTGATCTAACGGAAGTGAAGCCTAACGAGTTTATTCGATATGGATTGGGATGCTTAGAG 417
Query 421 GCATTTGCGTCTCGAGGAGACGAATGTGCTAAAGAGATTCGTGAAAAGATGAGAATTGTG 480
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCATTAGCGTCTCGAGGTGACGAATGTGCTAAAGAGATTCGTGAAAAGATGAGAATTGTG 477
Query 481 GTTGCAGGTGGAGATGGAACCGTTGGTTGGGTTCTAGGATGTCTCGGTGAACTTAATTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 GTTGCAGGTGGAGATGGAACCGTTGGTTGGGTTCTAGGATGTCTCGGTGAACTCAATTTA 537
Query 541 CAAAACCGGTTACCCGTTCCTCCGGTTTCGATAATGCCACTCGGAACGGGAAACGATCTT 600
||||||||| |||| |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 538 CAAAACCGGCTACCTGTTCCTCCGGTTTCTATTATGCCACTCGGAACCGGAAACGATCTT 597
Query 601 TCAAGAAGTTTCGGATGGGGAGGTTCATTCCCATTTGCGTGGAAATCTGCGATAAAACGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCAAGAAGTTTCGGATGGGGAGGTTCATTCCCATTTGCGTGGAAATCTGCGATAAAACGA 657
Query 661 ACACTTCATAGAGCAAGTGTTGCTCCTATAAGCCGTTTAGATAGTTGGAATATTCTGATT 720
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACACTTCATAGGGCTAGTGTTGCTCCTATAAGCCGTTTAGATAGTTGGAATATTCTGATT 717
Query 721 ACAATGCCTTCTGGTGAAATTGTGGATCCTCCTTATTCTTTAAAGGCTACACAAGAATGT 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 ACAATGCCTTCTGGTGAAATTGTGGATCCTCCTTATTCTTTAAAAGCTACACAAGAATGT 777
Query 781 TACATTGACCAGAATTTGGAGATAGAGGGAGAGATCCCTCCATCGACGAATGGCTATGAA 840
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 TACATTGACCAGGGTTTGGAGATAGAGGGAGAGATGCCTCCATCGACGAATGGCTATGAA 837
Query 841 GGAGTCTTCTACAATTACTTTAGTATAGGTATGGATGCTCAAGTGGCTTACGGTTTTCAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAGTCTTCTACAATTACTTTAGTATAGGTATGGATGCTCAAGTGGCTTACGGTTTTCAC 897
Query 901 CATTTGCGCAACGAAAAGCCTTACCTTGCAAATGGCCCTATCGCCAATAAGATTATATAC 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CATTTGCGCAATGAAAAGCCTTACCTTGCAAATGGCCCTATCGCCAATAAGATTATATAC 957
Query 961 TCGGGATATGGTTGCTCTCAGGGTTGGTTCCTCACTCACTGCATAAATGACCCAGGTTTA 1020
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 958 TCAGGATATGGTTGCTCTCAGGGTTGGTTCCTCACACACTGCATAAACGACCCGGGTTTA 1017
Query 1021 AGGGGTCTCAAGAACATTATGACATTGCATATAAAAAAGTTGGACTCATCCGAGTGGGAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGGGTCTCAAGAACATTATGACATTGCATATAAAAAAGTTGGACTCATCCGAGTGGGAG 1077
Query 1081 AAAGTACCAGTTCCCAAAAGTGTAAGAGCAGTTGTTGCATTGAATCTACATAGCTATGGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAGTACCAGTTCCCAAAAGTGTAAGAGCAGTTGTTGCATTGAATCTACATAGCTATGGA 1137
Query 1141 AGTGGAAGAAACCCTTGGGGAAATCTCAAACAAGATTATCTTGAAAAAAGAGGTTTTGTG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 AGTGGAAGAAACCCTTGGGGAAATCTCAAACAAGATTATCTTGAAAAAAGAGGCTTTGTG 1197
Query 1201 GAGGCACAAGCCGATGATGGACTACTTGAGATCTTTGGGTTAAAGCAAGGATGGCATGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAGGCACAAGCCGATGATGGACTACTTGAGATCTTTGGGTTAAAGCAAGGATGGCATGCT 1257
Query 1261 TCCTTTGTTATGGTTGAGCTTATATCTGCCAAACACATTGCACAG 1305
|||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1258 TCCTTTGTTATGGTTGAGCTCATATCTGCCAAGCACATTGCACAG 1302
Score = 296 bits (160), Expect = 3e-79
Identities = 162/163 (99%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 1302 ACAGGCGGCAGCGATAAGGCTGGAGATAAGAGGAGGAGACTGGAAAGATGCGTTTATGCA 1361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ACAGGCGGCAGCGATACGGCTGGAGATAAGAGGAGGAGACTGGAAAGATGCGTTTATGCA 1391
Query 1362 AATGGATGGAGAGCCATGGAAACAGCCTATGACCAGAGACTACTCTACCTTTGTTGACAT 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AATGGATGGAGAGCCATGGAAACAGCCTATGACCAGAGACTACTCTACCTTTGTTGACAT 1451
Query 1422 TAAGAGAGTCCCTCACCAGTCTTTGGTCGTCAAAGGAGATTGA 1464
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TAAGAGAGTCCCTCACCAGTCTTTGGTCGTCAAAGGAGATTGA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5