BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57700.3
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495867 jgi|Araly1|495867|fgenesh2_kg.8__1683__AT5G57700.2 1821 0.0
> Ahg495867 jgi|Araly1|495867|fgenesh2_kg.8__1683__AT5G57700.2
Length=1311
Score = 1821 bits (986), Expect = 0.0
Identities = 1107/1166 (95%), Gaps = 6/1166 (1%)
Strand=Plus/Plus
Query 49 ATGTCAGAAACAGAATTT-AAAGTGTTGCTTGAGACATTCACATTTCCTGCTGATTCTGC 107
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 113 ATGTCAGAAACAG-ATTTCAAAGTGTTGCTTGAGACATTCACATTCCCTGCTGATTCAGC 171
Query 108 TCCCTTCAAGAGTTGTCATGCCTCTACCATAGTTGAGGTTGTTAAAGATCA-TTTCTTGG 166
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 172 TCCCTTCAAGAGTTGTCATGCCTCTACCATAGTTGAGGTTGTTGAAGATCATTTTC-TGA 230
Query 167 CTGCGTATTTCGGAGGCACCAGGGAAGGAGCACCTGATGTCAAAATCTGGTTGCAGCATT 226
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTGCGTATTTCGGAGGCACCACGGAAGGAGCACCTGATGTCAAAATCTGGTTGCAGCATT 290
Query 227 TCAAGGATGGTCAATGGGATTCACCGGTTATTGTTGATGAAGAGCCAGGAGTTCCAATGT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCAAGGATGGTCAATGGGATTCACCGGTTATTGTTGATGAAGAGCCAGGAGTTCCAATGT 350
Query 287 ATAACCCTGTCTTGTTCAAACTTCCATCTCATGAGCTCTTATTGTTCTACAAAATCGGCC 346
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 351 GGAACCCTGTCTTGTTCAAACTTCCTTCTCAAGAGCTCTTATTGTTCTACAAAATCGGCC 410
Query 347 AGGAGGTTCAAAAATGGAGTGGTTGCATGAAACGATCATATGATAAAGGTATAACTTGGA 406
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 AGGAGGTTCAAAAATGGAGTGGTTGCATGAAACGATCATATGATAAAGGTAGAACTTGGA 470
Query 407 CTGAAAGAGAACAGCTTCCTCCTGGGATTCTCGGTCCTATCAAAAACAAGCCCATTTTGC 466
|||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 471 CTGAAAGAGAACAGCTTCCTCCAGGGATTCTCGGTCCCATCAAAAACAAGCCTATATTGC 530
Query 467 TTGAAGACGGTACTCTCCTTTGCGGATCATCTGTTGAGAGTTGGAATTCTTGGGGAGCAT 526
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 531 TTGAAGATGGTACACTCCTTTGCGGATCATCTGTTGAAAGTTGGAATTCTTGGGGAGCGT 590
Query 527 GGATGGAGGTCACTTCAGATGCGGGTAGAACATGGAGAAAGAAAGGGCCAATATACATTC 586
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 591 GGATGGAGGTCACTTCAGACGCGGGTAGATCATGGAGAAAGCAAGGGCCAATATACATTC 650
Query 587 AAGGCAAGAGTCTTAGCGTGATCCAACCAGTTCCATACCAAACCGCAGCTGGGAACTTAC 646
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 651 AAGGCAAGAGTCTTAGCGTGATCCAACCGGTTCCATACCAAACCGCAACTGGGAAATTAC 710
Query 647 GGATTTTACTCAGATCCTTTACTGGCATTGACAGAATCTGTATCTCAGAGTCTT-TGGAT 705
|| ||||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct 711 GGGTTTTACTCAGATCCTTTACCGGCATTGATAGAATCTGTATCTCAGAATCTTCTA-AT 769
Query 706 GGCGGTGAGAACTGGAGTTTTGCAGTACCAACGGTTCTCCCAAACCCAAATTCAGGTATT 765
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 GGCGGTGAGAACTGGAGTTTTGCAGTACCAACAGTTCTCCCAAACCCAAATTCAGGTATC 829
Query 766 GATGGAGTCAAGCTTAAGGATGGTAGGCTAGTGCTTGCTTACAACACAGACTCAAGAGGT 825
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 830 GATGGAGTCAAGCTAAAGGATGGTAGGGTAGTGCTTGCTTACAACACAGACTCAAGAGGT 889
Query 826 GTGCTCAAATTAGGAGTTTCTTTAGACGACGGTGATTCATGGACCGATATTTTAACGTTG 885
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 890 GTGCTCAAAGTAGGAGTTTCTTTAGACGACGGTGATTCATGGACCGATGTTTTAACATTG 949
Query 886 GAGGAATCTCCGGGAATGGAGTATTCGTACCCGGCTGTTATACAAGCCGGAGACGGCAAT 945
|||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||
Sbjct 950 GAGGAATCTCCGGGAATGGAATTTTCGTACCCGGCGGTTATACAAGCCGGAGACGGGAAT 1009
Query 946 GTCCACGTCACCTATACATATAACAGGACACAAATTAAGCATGTGGTGCTCAAGACTGCG 1005
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1010 GTCCACGTCACCTATACTTATAACAGGACACAAATTAAGCATGTTGTGCTCAAGACTGCG 1069
Query 1006 ACAGATATCGATTCGAAGCCATACCGACATGGTGAAGCAGGAGGAGGACACGTGAACTTG 1065
|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1070 ACAGATATCGATTCAAAGCCATACCGACATCGTGAAGCAGAAGGAGGACACGTGAACTTG 1129
Query 1066 GATTTGTACGAACCAAACATTAATTAATTAGCTATTTGTCTCTTGAACCATCGATGTGGA 1125
| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 1130 GGTTTGTACGAACCAAACATTGATTAATTAGCTATTTGTCTCTTGAACCATTGATATGGA 1189
Query 1126 GTGTGACTTCCTTCTTACGGAAGAACAAAGAATGTTCTCTTTCTTGTCTTGTAAGTTATT 1185
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1190 GTGTGACTTTCTTCTTACGGAAGAACAAAGAATTTTCTCTTTCTTGTCTTGTAAGTTATG 1249
Query 1186 GATTGATCGATTCTTGAGTTTGTAAA 1211
|||||||| |||||||||||||||||
Sbjct 1250 GATTGATCCATTCTTGAGTTTGTAAA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5