BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57720.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332063 jgi|Araly1|332063|fgenesh1_pm.C_scaffold_8001406 1212 0.0
> Ahg332063 jgi|Araly1|332063|fgenesh1_pm.C_scaffold_8001406
Length=894
Score = 1212 bits (656), Expect = 0.0
Identities = 823/901 (91%), Gaps = 21/901 (2%)
Strand=Plus/Plus
Query 101 TTAGAAAATGGGTTTCCTCCATATCCAGATTTCCTCAAGATCTTCAACTCCCATGAAGAT 160
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 7 TTAGAAAATGGGTTTCCTCCATATCCAGATTTCCTCAAGATCTTTAACTCCCATGAACAT 66
Query 161 TCTCAACTTTTGGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAG 220
||||||| |||||||||||||||| | ||||||| ||| |||||||||||||| ||||||
Sbjct 67 TCTCAACGTTTGGTAATCCCAAGAGGTTACAACAAGTACTATCCAAACCCTCTTCCTCAG 126
Query 221 ACAGCTGTTCTCAAGAATCCGGAAGGAAGATTTTGGAATGTCCAATGGACAAAAAGCCAA 280
||||||||||||||||| ||||||||||| || ||||||||| ||||||||| |||||||
Sbjct 127 ACAGCTGTTCTCAAGAAGCCGGAAGGAAGCTTCTGGAATGTCAAATGGACAATAAGCCAA 186
Query 281 GAGGTGATTATTAGCTTGCAAGAAGGTTGGGTAAAGTTTGTCAAAGACAATGGTCTTATT 340
|||| || |||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 187 GAGGAGACTATTCGCTTCCAAGAAGGTTGGGAAAAGTTTGTCAAAGACAATGGTCTTATT 246
Query 341 GACAGAGACTTTCTCTTATTCACCTATGATGGTTCCCGGAGCTTTTGGGTACGCATCCAC 400
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 247 GACAGAGACTTTCTCTTATTCACTTATGATGGTTGTCGGAGCTTTTGGGTACGAATCCAC 306
Query 401 CGGAATGGCCTCCCCTTGGAGCCAACCGCTCCTATCAAAATACAAGAGATATCGGATGAT 460
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 307 CGGAATGGCCTCCCCTTGGAGCCAACCGCTCCTATCAAAATACAAGAAATATCAGATGAT 366
Query 461 GAAGATGAGACCAA-TGGTGATGGTGATCCTCATATGGAAGAAGAAGGAGATA-CCGATG 518
|||||||| | ||| |||| ||||||||| |||||| | ||||||||||||| || |||
Sbjct 367 GAAGATGATA-CAATTGGTCATGGTGATCATCATAT-G--GAAGAAGGAGATAGCC-ATG 421
Query 519 AGAACATGATAGTTTCTCTTTCTCTCGGAAGCAGCGATGAAGTTGGtgatgatgatgatg 578
|||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||
Sbjct 422 AGAACATGATCGTTTCTCTCTCTCTCGGAAGCAGCGATGAA------GCTGATGACGATG 475
Query 579 atgattatgatACAGCGATTTGTGATGAAGTTAACAAAGCTAGTGGAAGTTCCAAGAAAG 638
|||||||||||||| ||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 476 ATGATTATGATACAACGA-TT-TG-TGAAGTTAACAAAGCTAGTGAAAGTTCCAAGAAAG 532
Query 639 GAAGGGTTACAAGAAAGCATCGTGATGATTCT-CT--TGCTTCTATT-ACTCCGCAAATT 694
||||| || ||||||||||||||| ||||||| | |||||||||| | |||| ||| |
Sbjct 533 GAAGGCTTGCAAGAAAGCATCGTGCTGATTCTATTGCTGCTTCTATTGA-TCCGGAAACT 591
Query 695 TTTCTTGCTGATCCCAATAACCCGTTCTTCATTTCAACTTCATCGTGTTCCAGGCGTATA 754
| ||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 592 TATCTTGATGATCCCAAAAACCCGTTCTTTATTTCAACTTCATCGTGTTCGAGGCGTGTA 651
Query 755 TTGGTAATTGCTAGGCAAGTAATAAAAGACTATGGCTTAAACTTTGACGGCACGGTCAAT 814
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 652 TTGGTAATTGCTAGGCAAGTAATAAAAGACTATGACTTAAACTTTGACGGCACTATCAAA 711
Query 815 CTAATCGATGGATTCGGGGAATTAACGAGAAAGGTTGGGAAATGGAAAGATCGTGTTGTG 874
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTCATCGATGGATTCGGGGAATTAACGAGAAAGGTTGGGAAATGGAAAGATCGTGTTGTG 771
Query 875 ATATACAAGTGGAACGAAATGTTTACGAGGAACAAAGTAAAGCAAGGAGACGTAATCATA 934
||||||||||| |||||||||||||||| ||||||| ||| |||||||||| |||||||
Sbjct 772 GTATACAAGTGGGACGAAATGTTTACGAGAAACAAAGCAAATCAAGGAGACGCAATCATA 831
Query 935 TGTGAGATTATACGCGAAGAAGATGTTGTTCGCTCCATCAAAGTGCACTTCGTGAAGAAT 994
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGTGAGGTTATACGCGAAGAAGATGTTGTTCGCTCCATCAAAGTGCACTTCGTGAAGAAT 891
Query 995 T 995
|
Sbjct 892 T 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5