BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57740.1
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950466 jgi|Araly1|950466|scaffold_802353.1 2516 0.0
Ahg950467 jgi|Araly1|950467|scaffold_802354.1 1402 0.0
Ahg894618 jgi|Araly1|894618|Al_scaffold_0006_2614 230 5e-59
> Ahg950466 jgi|Araly1|950466|scaffold_802353.1
Length=1569
Score = 2516 bits (1362), Expect = 0.0
Identities = 1493/1557 (96%), Gaps = 5/1557 (0%)
Strand=Plus/Plus
Query 483 TTTCAATTTTGTATCGTAAAACGATGAGGTTTCTAAGCCTCGTCGGAAACTCATTCGGTT 542
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCAGCTTTGTATCGTAAAACGATGAGGTTTCTAAGCCTCGTCGGAAACTCATTCGGTT 60
Query 543 GTTCTGCGTCCGGCGAACGCTTAGTATCAGCGGCCAGAGACGGTGATTTACAGGAAGCTA 602
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 61 GTTCTGCGTCCGGCGAACGCTTAGTATCAGCGGCCAGAGACGGCGATTTACAGGAAGCCA 120
Query 603 AAGCTCTCTTAGATTACAATCCAAGACTCGCTCGTTACTCTACTTTTGGCGTTCGTAACT 662
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTCTCTTAGATTACAACCCAAGACTCGCTCGTTACTCTACTTTTGGCGTTCGTAACT 180
Query 663 CTCCTCTTCATTACTCCGCCGCTCAAGGCCACCACGAGATAGTTTCTCTGTTGGTGGAAT 722
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCTCTTCATTACTCTGCCGCTCAAGGCCACCACGAGATAGTTTCTCTGTTGGTGGAAT 240
Query 723 CAGGAGTTGATATTAATCTCCGGAACTACCGTGGACAGACGGCTTTGATGCAAGCTTGTC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGGAGTTGATATTAATCTCCGGAACTACCGTGGACAGACGGCTTTGATGCAAGCTTGTC 300
Query 783 AACATGGTCATTGGGAGGTTGTTTTGATTCTGATTCTTTTTGGTGCTAATATTCACAGAT 842
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 AACATGGTCATTGGGAGGTTGTTTTGATTCTGATTCTCTTTGGTGCTAATATTCACAGAT 360
Query 843 CAGATTACTTAAATGGTGGTACTGCTTTACACCTTGCGGCTTTAAATGGTCACCCTCGGT 902
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CAGATTACTTAAATGGCGGTACTGCTTTACACCTTGCGGCTTTAAATGGTCATCCTCGGT 420
Query 903 GTATCAGGATCTTGCTTTCGGAGTATATACCAAGTGTTCCTAATTGCTGGAGCCTTTTAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTATCAGGATCTTGCTTTCGGAGTATATACCAAGTGTTCCTAATTGCTGGAGCCTTTTAA 480
Query 963 AGAATAAGAAAACTTCAGTTGCTGGATTCGATTCTAGTGTTCTTCACGAAGTGATCAACA 1022
||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 481 AGAATAAGAAATCTTCAGTTGCTGGATTTGATCCAAGTGTTCTTCACGAAGTGATCAACA 540
Query 1023 GAGCAGCAGATGGTGGAATCACACCTCTTCATGTGGCGGCTTTGAACGGACATATAGAGA 1082
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 541 GAGCAGCAGATGGAGGAATCACACCTCTTCATGTAGCGGCTTTGAACGGACACATAGAGA 600
Query 1083 CGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTACTCAGGTCACTGTGGAAGATGGAA 1142
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CGGTGCAGTTGCTCTTGGATTTGGGAGCTTCGGTTACTCAGGTCACAGTGGAAGATGGAA 660
Query 1143 CTACTATAGATCTTATAGGTGCTGGGAGTACAGCTCTCCATTATGCTTCATGTGGTGGAA 1202
| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 661 CCACAATAGATCTTATAGGTGCTGGGAGTACAGCTCTTCATTATGCTTCATGTGGCGGAA 720
Query 1203 ACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTGCTTGTTTAGCTGCCGTAAACTCCA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTGCTTGTTTAGCTGCCGTAAACTCCA 780
Query 1263 ACGGATGGACACCAATGATGGTAGCTCGTTCATGGCACCGAAACTGGCTGGAAGAAATCC 1322
|||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 781 ACGGATGGACGCCATTGATGGTTGCTCGTTCATGGCACCGGAACTGGCTGGAAGAAATCC 840
Query 1323 TGAACCCAACAACAGAACAACCACAACTCCATTTGCCAAATGTCCCCTCTCCTTTCCTCT 1382
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGAACCCAACCACAGAACAACCACAACTCCATTTGCCAAATGTCCCCTCTCCTTTCCTCT 900
Query 1383 GCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAGAATGCGGCTGGCGAGAAAACGATT 1442
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 901 GCCTTCCTTTAATGAGCATTGTCAAGATTGCTCAAGAATGCGGCTGGCGAGAAAACGATT 960
Query 1443 GTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTTTGGAAAGAAAATGCACTGTGGCAG 1502
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 GTCTCACTCCATGTCGTGACCCTTGTGCCGTTTGTTTGGAAAGAAAATGCACTGTAGCAG 1020
Query 1503 CAGATGGATGTGCTCATGAGTTCTGCACAAACTGTGCATTATACCTAAGCACCACAAGCA 1562
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1021 CAGATGGATGTGCTCATGAGTTCTGCACAAACTGCGCATTATACCTAAGCACCACAAACA 1080
Query 1563 TAACATCGTCAAAGACCTCA-AACGTCACACCAGGCTCTGTCCCGTGTCCTCTCTGTCGC 1621
||||||| |||||||| ||| || | ||| |||||||||||||| |||||||||||||||
Sbjct 1081 TAACATCATCAAAGACATCACAA-GCCACCCCAGGCTCTGTCCCATGTCCTCTCTGTCGC 1139
Query 1622 AATGGCATTGTATCTTTCACCAAACTTCCCCATACAACGGCAACAACAAGAACATCAACA 1681
|| |||||||||||||||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 1140 AACGGCATTGTATCTTTCACCAAACTTCCCCATACAAT---AACAGCAACAACAACAACA 1196
Query 1682 TCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACTTGCTCCTCTGATGTCTTAGACACA 1741
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1197 TCATCAAGAACAAGCATCTCCTTGTCCTTTTGCACTTGCTCCTCTGATGTCTTAGACACA 1256
Query 1742 GCTCTCCTAACTAACCCTCACTACAGTTGTAAACCGGTTGTGTCAAGAACGGGTTCTCGA 1801
|||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| |||||
Sbjct 1257 GCTCTCCTCACTAACCCTCATTACAGTTGTAGACCGGTTGTGTCAAGAACCGGTACTCGA 1316
Query 1802 ACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCTCTTAGCTGCCGCCGGTTTCCTCCA 1861
| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1317 ATTCCACAATCTGCTAGATCATCATCGTTTCGGTCTCTTAGCTGCCGGCGGTTTCCTCCA 1376
Query 1862 AGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCTCGAAGCCGGTTAATTGGTGGATCA 1921
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1377 AGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCGCAAAGCCGGTTAATGGGTGGATCA 1436
Query 1922 TATTCAAGATCCGGTGTAGGATTCAGGCGATCAACGTCGCAGGTTGAAGGGAAACGTTCT 1981
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1437 TATTCAAGATCCGGTGTAGGATTCAGGCGCTCGACGTCACAGGTTGAAGGGAAACGTTCT 1496
Query 1982 TGGTTTTCTGCACTTAACCATTGTGTTACAACCGGTGGAAGTGCTTGCTAACTCAAA 2038
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGGTTTTCTGCTCTTAACCATTGTGTTACAACCGGTGGAAGTGCTTGCTAACTCAAA 1553
> Ahg950467 jgi|Araly1|950467|scaffold_802354.1
Length=1283
Score = 1402 bits (759), Expect = 0.0
Identities = 858/906 (95%), Gaps = 5/906 (1%)
Strand=Plus/Plus
Query 1059 CGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTCGGTTA 1118
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 CGGCTTTGAACGGACACATAGAGACGGTGCAGTTGCTCTTGGATTTGGGAGCTTCGGTTA 316
Query 1119 CTCAGGTCACTGTGGAAGATGGAACTACTATAGATCTTATAGGTGCTGGGAGTACAGCTC 1178
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 317 CTCAGGTCACAGTGGAAGATGGAACCACAATAGATCTTATAGGTGCTGGGAGTACAGCTC 376
Query 1179 TCCATTATGCTTCATGTGGTGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 1238
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TTCATTATGCTTCATGTGGCGGAAACACGCAGTGTTGCCAGCTTTTGATCAGTAAGGGTG 436
Query 1239 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACACCAATGATGGTAGCTCGTTCATGGC 1298
|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 437 CTTGTTTAGCTGCCGTAAACTCCAACGGATGGACGCCATTGATGGTTGCTCGTTCATGGC 496
Query 1299 ACCGAAACTGGCTGGAAGAAATCCTGAACCCAACAACAGAACAACCACAACTCCATTTGC 1358
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 497 ACCGGAACTGGCTGGAAGAAATCCTGAACCCAACCACAGAACAACCACAACTCCATTTGC 556
Query 1359 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAATATTGCTCAAG 1418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 557 CAAATGTCCCCTCTCCTTTCCTCTGCCTTCCTTTAATGAGCATTGTCAAGATTGCTCAAG 616
Query 1419 AATGCGGCTGGCGAGAAAACGATTGTCTGACTCCATGTCGTGACCCTTGTGCCGTTTGTT 1478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 617 AATGCGGCTGGCGAGAAAACGATTGTCTCACTCCATGTCGTGACCCTTGTGCCGTTTGTT 676
Query 1479 TGGAAAGAAAATGCACTGTGGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGTG 1538
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 677 TGGAAAGAAAATGCACTGTAGCAGCAGATGGATGTGCTCATGAGTTCTGCACAAACTGCG 736
Query 1539 CATTATACCTAAGCACCACAAGCATAACATCGTCAAAGACCTCA-AACGTCACACCAGGC 1597
||||||||||||||||||||| ||||||||| |||||||| ||| || | ||| ||||||
Sbjct 737 CATTATACCTAAGCACCACAAACATAACATCATCAAAGACATCACAA-GCCACCCCAGGC 795
Query 1598 TCTGTCCCGTGTCCTCTCTGTCGCAATGGCATTGTATCTTTCACCAAACTTCCCCATACA 1657
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 TCTGTCCCATGTCCTCTCTGTCGCAACGGCATTGTATCTTTCACCAAACTTCCCCATACA 855
Query 1658 ACGGCAACAACAAGAACATCAACATCATCAAGAACAAGCATCTCCTTGTCCTTCTGCACT 1717
| |||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 856 AT---AACAGCAACAACAACAACATCATCAAGAACAAGCATCTCCTTGTCCTTTTGCACT 912
Query 1718 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTAACTAACCCTCACTACAGTTGTAAACCG 1777
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 913 TGCTCCTCTGATGTCTTAGACACAGCTCTCCTCACTAACCCTCATTACAGTTGTAGACCG 972
Query 1778 GTTGTGTCAAGAACGGGTTCTCGAACTCCACAATCCGCTAGATCATCAGCGTTTCGGTCT 1837
|||||||||||||| ||| |||||| ||||||||| |||||||||||| |||||||||||
Sbjct 973 GTTGTGTCAAGAACCGGTACTCGAATTCCACAATCTGCTAGATCATCATCGTTTCGGTCT 1032
Query 1838 CTTAGCTGCCGCCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCT 1897
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTTAGCTGCCGGCGGTTTCCTCCAAGTCTCTGCCTTGGTGGCTCAGATGTTGATGAACCG 1092
Query 1898 CGAAGCCGGTTAATTGGTGGATCATATTCAAGATCCGGTGTAGGATTCAGGCGATCAACG 1957
| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1093 CAAAGCCGGTTAATGGGTGGATCATATTCAAGATCCGGTGTAGGATTAAGGCGATCGACG 1152
Query 1958 TCGCAG 1963
|| |||
Sbjct 1153 TCTCAG 1158
> Ahg894618 jgi|Araly1|894618|Al_scaffold_0006_2614
Length=615
Score = 230 bits (124), Expect = 5e-59
Identities = 131/134 (98%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 994 TTCTAGTGTTCTTCACGAAGTGATCAACAGAGCAGCAGATGGTGGAATCACACCTCTTCA 1053
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 TTCAAGTGTTCTTCACGAAGTGATCAACAGAGCAGCAGATGGAGGAATCACACCTCTTCA 537
Query 1054 TGTGGCGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTGGCGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTC 597
Query 1114 GGTTACTCAGGTCA 1127
|||||||| |||||
Sbjct 598 GGTTACTC-GGTCA 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84179441450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5