BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57760.1

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950468 jgi|Araly1|950468|scaffold_802355.1                        416    8e-116
  Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782           279    1e-74 


> Ahg950468 jgi|Araly1|950468|scaffold_802355.1
Length=277

 Score =  416 bits (225),  Expect = 8e-116
 Identities = 254/268 (95%), Gaps = 2/268 (1%)
 Strand=Plus/Plus

Query  1    GCAAGAAGTGATGAAGATGGTGAAGTGTAAGAAGGTT-AGGCACCGCGGTCGCAAAGGAC  59
            ||||||||||||||||||||||||||||||||| ||| |  |||||| ||| ||||||||
Sbjct  11   GCAAGAAGTGATGAAGATGGTGAAGTGTAAGAA-GTTCACCCACCGCAGTCTCAAAGGAC  69

Query  60   AAAAGGAGAAACCCAAGTTTCGAGAAACTTGTATGCAAAGAAACCTCGGGATCCTTCGCA  119
             |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct  70   GAAAGGAAAAACCCAAGTTTCGAGAAACTTGTATTCAAAGAAACCTCGGGATCCTTCGTA  129

Query  120  GGATTGTACCAGGCTGTGAAGAGATCGAAGACGAGGAAGCCTTGTTTCTCAAGTCAATTC  179
            |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  130  GGATTGTACCAGGCTGTGAAGAGACCGAGGACGAGGAAGCCTTGTTTCTCAAGTCAATTC  189

Query  180  AGCATCTCTTGCTTCTCAAATCTCAGGTTAATTTACTTAAAAAGCTAGCTGATGTATGTG  239
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  190  AGCATCTCTTGCTTCTCAAATCTCAGGTTACTTTACTTAGAAAGCTAGCTGATGTATGTG  249

Query  240  GAGTCTAATTAAAAGAACGTAAGTTCTC  267
            ||||||||||||||||||||||||||||
Sbjct  250  GAGTCTAATTAAAAGAACGTAAGTTCTC  277


> Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782
Length=1236

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 163/169 (96%), Gaps = 0/169 (0%)
 Strand=Plus/Minus

Query  382   agtttttGTTGTAGAAAGTGAGAGCGTAATTTGTACTTAAGGAGGAAGAAGAGAGAGTGA  441
             |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  1234  AGTTTTTGTTGTAGAAAGTGAGTGCGTAATTTGTGCTTAAGGAGGAAGAAGAGAGAGTGA  1175

Query  442   GCATGTGTTGGATCGTTGTGACCCATGTCTTGTAACGATTGTAATCGTCGGCCATGTCTA  501
             |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  1174  GCATGTGTTGTATCGTTGTGACCCATGTCTTGTAACGACTGTAATCATCGGCCATGTCTA  1115

Query  502   ACTTGATAGCTCCTCTGTTCGTCCTCAGGACAATGAGATAACAAGTGTC  550
              ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1114  GCTTGATAGCTCCTCTGTTCGTCCTCAGGACAATGAGATAACAAGTGTC  1066



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20184306581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5