BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57770.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782 1910 0.0
Ahg950468 jgi|Araly1|950468|scaffold_802355.1 207 1e-52
> Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782
Length=1236
Score = 1910 bits (1034), Expect = 0.0
Identities = 1170/1234 (95%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 19 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 60
Query 79 CCAGATACTATGGACTTTCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 138
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGACACTATGGACTTCCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 120
Query 139 CCAGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 198
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 180
Query 199 CAAGGCGACTCAAGTCCTGTTTCTTGTGCTATGATGGATACGAGCATGAAGATGGACGAT 258
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 181 CAAGGCGACTCGAGTCCTGTTTCTTGTGCTATGATGGATAAGAGCATGAAGATGGAAGAT 240
Query 259 CCAGATTTTAAGCCCTCGATGCCTTCATGGAAAACCAATGATGTGAAGTCATGGATATGG 318
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 241 CCAGATTTTAAGCCCTCGATGGCTTCATGGAAAACCAATGATGTCAAGTCATGGATATGG 300
Query 319 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCTTTTTCCGCAAG--A-----A 371
||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 301 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCGTTTTCCGCAAGAAACTTGTA 360
Query 372 A-----C--TT-AAACTTCCATGGAAAATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 423
| | || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATTGGCCATTTGAAACTTCCATGGAAGATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 420
Query 424 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTCCACGCCGCCGTG 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 421 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTTCACGCTGCCGTT 480
Query 484 TCATTGGCTGGTCTTGCCGCTGCTCTCGCCGCCGTGGCTTCAGAGAACGCTGGAAAAGAT 543
|| ||||||||||| || ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 481 TCCTTGGCTGGTCTAGCGGCTGCTCTCGCCGCCGTAGCTTCCGAGAACGCCGGAAAAGAT 540
Query 544 GGTGGAAACGGTCGACCTAGCACGAGGGAGACTGCTGTGGCTTCTGCTGCGGCTGTGGTG 603
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GGTGGAAACGGTCGACCGAGCACGAGGGAGACTGCTGTGGCTTCTGCAGCGGCTGTGGTG 600
Query 604 GCGGCACAATGTGCGCAAATGGCAGAGACAATGGGAGCAAACAGAGACCAGCTCAGCACG 663
||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GCGGCGCAGTGTGCGCAGATGGCAGAGACAATGGGAGCAAACAGAGATCAGCTCAGCACA 660
Query 664 ATGATTGGTTCAGCCATGACCGGGACAAGTGTTAGTGAGATACTCACTCTCACTGCCTCA 723
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ATGATTGGTTCGGCCATGACCGGGACAAGTGTCAGTGAGATACTCACTCTCACTGCCTCA 720
Query 724 GCTACAACTTCGTTGAGAGGTGCCGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATTAAT 783
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 721 GCTACAACTTCGTTGAGAGGTGCTGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATCAAT 780
Query 784 AGATTGAATGGCTCTGCACCTGTGTTGCCTATTGAAGACTCTTCTTATTTGCCTCCTGAA 843
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 AGATTGAATGGCTCTGCTCCTGTGTTGCCTATCGAAGACTCTTCTTATTTGCCTCCTGAA 840
Query 844 TTCGATAAGAACACATCTGTTCTTGCTAAGGGAACAGATCTCTTCGTCGAGACACCAGAT 903
||||| ||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 841 TTCGACAAGAACATATCTGTTCTTGCTAAAGGAACCGATCTCTTCGTTGAAACACCAGAT 900
Query 904 GGGGATTTCAAGGCTAGGACGGTTTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTT 963
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 901 GGGGATTTCAAGGCTAGGACAGTGTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTC 960
Query 964 AAAATGAAGAAACATAATCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1023
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAATGAAGAAACATAACCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1020
Query 1024 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAGGACACTTGTTATCTC 1083
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAAGACACTTGTTATCTC 1080
Query 1084 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGTTAGACATGGCCGACGATTACAATCGT 1143
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 1081 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGCTAGACATGGCCGATGATTACAGTCGT 1140
Query 1144 TACAAGACATGGGTCACAACGATCCAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGT 1203
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1141 TACAAGACATGGGTCACAACGATACAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGC 1200
Query 1204 ACAAATTACGCTCTCACTTTCTACAACaaaaact 1237
||||||||||| ||||||||||||||||||||||
Sbjct 1201 ACAAATTACGCACTCACTTTCTACAACAAAAACT 1234
> Ahg950468 jgi|Araly1|950468|scaffold_802355.1
Length=277
Score = 207 bits (112), Expect = 1e-52
Identities = 116/118 (98%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1352 GAGAACTTACGTTCTTTTAATTAGACTCCACATACATCAGCTAGCTTTTTAAGTAAATTA 1411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 277 GAGAACTTACGTTCTTTTAATTAGACTCCACATACATCAGCTAGCTTTCTAAGTAAAGTA 218
Query 1412 ACCTGAGATTTGAGAAGCAAGAGATGCTGAATTGACTTGAGAAACAAGGCTTCCTCGT 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ACCTGAGATTTGAGAAGCAAGAGATGCTGAATTGACTTGAGAAACAAGGCTTCCTCGT 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5