BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57770.1 Length=1469 Score E Sequences producing significant alignments: (Bits) Value Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782 1910 0.0 Ahg950468 jgi|Araly1|950468|scaffold_802355.1 207 1e-52 > Ahg357995 jgi|Araly1|357995|fgenesh1_pg.C_scaffold_8001782 Length=1236 Score = 1910 bits (1034), Expect = 0.0 Identities = 1170/1234 (95%), Gaps = 15/1234 (1%) Strand=Plus/Plus Query 19 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 60 Query 79 CCAGATACTATGGACTTTCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 138 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCAGACACTATGGACTTCCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 120 Query 139 CCAGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 198 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 180 Query 199 CAAGGCGACTCAAGTCCTGTTTCTTGTGCTATGATGGATACGAGCATGAAGATGGACGAT 258 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 181 CAAGGCGACTCGAGTCCTGTTTCTTGTGCTATGATGGATAAGAGCATGAAGATGGAAGAT 240 Query 259 CCAGATTTTAAGCCCTCGATGCCTTCATGGAAAACCAATGATGTGAAGTCATGGATATGG 318 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 241 CCAGATTTTAAGCCCTCGATGGCTTCATGGAAAACCAATGATGTCAAGTCATGGATATGG 300 Query 319 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCTTTTTCCGCAAG--A-----A 371 ||||||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 301 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCGTTTTCCGCAAGAAACTTGTA 360 Query 372 A-----C--TT-AAACTTCCATGGAAAATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 423 | | || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 361 ATTGGCCATTTGAAACTTCCATGGAAGATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 420 Query 424 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTCCACGCCGCCGTG 483 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 421 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTTCACGCTGCCGTT 480 Query 484 TCATTGGCTGGTCTTGCCGCTGCTCTCGCCGCCGTGGCTTCAGAGAACGCTGGAAAAGAT 543 || ||||||||||| || ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct 481 TCCTTGGCTGGTCTAGCGGCTGCTCTCGCCGCCGTAGCTTCCGAGAACGCCGGAAAAGAT 540 Query 544 GGTGGAAACGGTCGACCTAGCACGAGGGAGACTGCTGTGGCTTCTGCTGCGGCTGTGGTG 603 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 541 GGTGGAAACGGTCGACCGAGCACGAGGGAGACTGCTGTGGCTTCTGCAGCGGCTGTGGTG 600 Query 604 GCGGCACAATGTGCGCAAATGGCAGAGACAATGGGAGCAAACAGAGACCAGCTCAGCACG 663 ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 601 GCGGCGCAGTGTGCGCAGATGGCAGAGACAATGGGAGCAAACAGAGATCAGCTCAGCACA 660 Query 664 ATGATTGGTTCAGCCATGACCGGGACAAGTGTTAGTGAGATACTCACTCTCACTGCCTCA 723 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 661 ATGATTGGTTCGGCCATGACCGGGACAAGTGTCAGTGAGATACTCACTCTCACTGCCTCA 720 Query 724 GCTACAACTTCGTTGAGAGGTGCCGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATTAAT 783 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 721 GCTACAACTTCGTTGAGAGGTGCTGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATCAAT 780 Query 784 AGATTGAATGGCTCTGCACCTGTGTTGCCTATTGAAGACTCTTCTTATTTGCCTCCTGAA 843 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 781 AGATTGAATGGCTCTGCTCCTGTGTTGCCTATCGAAGACTCTTCTTATTTGCCTCCTGAA 840 Query 844 TTCGATAAGAACACATCTGTTCTTGCTAAGGGAACAGATCTCTTCGTCGAGACACCAGAT 903 ||||| ||||||| ||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct 841 TTCGACAAGAACATATCTGTTCTTGCTAAAGGAACCGATCTCTTCGTTGAAACACCAGAT 900 Query 904 GGGGATTTCAAGGCTAGGACGGTTTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTT 963 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 901 GGGGATTTCAAGGCTAGGACAGTGTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTC 960 Query 964 AAAATGAAGAAACATAATCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1023 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AAAATGAAGAAACATAACCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1020 Query 1024 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAGGACACTTGTTATCTC 1083 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1021 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAAGACACTTGTTATCTC 1080 Query 1084 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGTTAGACATGGCCGACGATTACAATCGT 1143 ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| Sbjct 1081 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGCTAGACATGGCCGATGATTACAGTCGT 1140 Query 1144 TACAAGACATGGGTCACAACGATCCAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGT 1203 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1141 TACAAGACATGGGTCACAACGATACAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGC 1200 Query 1204 ACAAATTACGCTCTCACTTTCTACAACaaaaact 1237 ||||||||||| |||||||||||||||||||||| Sbjct 1201 ACAAATTACGCACTCACTTTCTACAACAAAAACT 1234 > Ahg950468 jgi|Araly1|950468|scaffold_802355.1 Length=277 Score = 207 bits (112), Expect = 1e-52 Identities = 116/118 (98%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1352 GAGAACTTACGTTCTTTTAATTAGACTCCACATACATCAGCTAGCTTTTTAAGTAAATTA 1411 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 277 GAGAACTTACGTTCTTTTAATTAGACTCCACATACATCAGCTAGCTTTCTAAGTAAAGTA 218 Query 1412 ACCTGAGATTTGAGAAGCAAGAGATGCTGAATTGACTTGAGAAACAAGGCTTCCTCGT 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 ACCTGAGATTTGAGAAGCAAGAGATGCTGAATTGACTTGAGAAACAAGGCTTCCTCGT 160 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54964223535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5