BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57780.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917490 jgi|Araly1|917490|Al_scaffold_0008_2241                    726    0.0  


> Ahg917490 jgi|Araly1|917490|Al_scaffold_0008_2241
Length=522

 Score =  726 bits (393),  Expect = 0.0
 Identities = 469/506 (93%), Gaps = 4/506 (1%)
 Strand=Plus/Plus

Query  117  ATGATGAACACGTACAACATGGTGAAGC-AAGAATTTATCAAGAAATGGATAAATACTCT  175
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct  19   ATGATGAACACGTACAACATGGTGAAGCAAAG-ATTTATCAAGAAATGGATAAATACTCT  77

Query  176  CCACATGTTAGATTCTTCTATCGAACATCCTTTGAACGTAACGGAAAGGAAAAATGCGAT  235
            ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct  78   CCACATGTTAGATTCTTCTATTGAACATCCTTTGAACGTAACCGAGAGGAAAAATGCGAT  137

Query  236  TAGACTATCATCGGACTTAGCCATGGCAGCTGCTCGAAATGGCTCTACCGTATGGAGCCG  295
            |||||||||||| ||||||||||| |||||  || |||  ||||||||||||||||||||
Sbjct  138  TAGACTATCATCAGACTTAGCCATCGCAGCCACTAGAAGCGGCTCTACCGTATGGAGCCG  197

Query  296  CGCTCTTATTTCTAGGAGCGGAAATAAGACAGCAAACAAACCCATGGCACGTCGAATACT  355
            |||||| || |||||||||||||| |||||| |||||||||| ||||| |||||||||||
Sbjct  198  CGCTCTCATCTCTAGGAGCGGAAACAAGACAACAAACAAACCAATGGCTCGTCGAATACT  257

Query  356  aaaaaaaGCTCGAAATCGGATGAAGAACCGTTGTAACATTCTTAGACGAAATGGCAATTT  415
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  258  AAAAAAAGCTCGAAATCGGATGAAGAACCGTTGTAACACTCTTAGACGAAATGGTAATTT  317

Query  416  CACGGCGAAAACCTGGGT-GAGAAAACGTACGGACTTGCTTAAGAGTCTTGTACCGGGAG  474
            |||||| ||||  ||||  ||||||||||||||| |||||||||||||||||||||||||
Sbjct  318  CACGGCAAAAAG-TGGGACGAGAAAACGTACGGAGTTGCTTAAGAGTCTTGTACCGGGAG  376

Query  475  GTGAGTTGATAGACGACAAAGATTATTTGATAAGAGAGACACTTGACTACATTGTCTATC  534
            | ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  377  GCGAGTTAATAGACGATAAAGATTATTTGATAAGAGAGACACTTGATTACATTGTCTATC  436

Query  535  TCCGAGCACAAGTGGACGTCATGCGAACCGTCGCAGCCGTCGATTTATTCACCCGAAACT  594
            ||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| | || |
Sbjct  437  TCCGAGCGCAAGTAGACGTCATGCGAACCGTCGCAGCCATCGATTTAGTCACCGGGAATT  496

Query  595  TAACCAACGATCGTAGGAACAAATAA  620
            ||||||||||||||||||||||||||
Sbjct  497  TAACCAACGATCGTAGGAACAAATAA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5