BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57785.1
Length=527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950472 jgi|Araly1|950472|scaffold_802359.1 414 3e-115
> Ahg950472 jgi|Araly1|950472|scaffold_802359.1
Length=268
Score = 414 bits (224), Expect = 3e-115
Identities = 252/266 (95%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 71 GAAGAAGACCGTTCGTGTGCAAAAACATGAGGTGTAGAGCACTTAACATTCGTAGAAGAA 130
|||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1 GAAGAAGACCGTTCGTGTGCAAAAGGATGAGGTGTAGAGCACTAAACATTCGGAGAAGAA 60
Query 131 AGAGAGTAATGGTTAATGTGAGCTCAAGGAAGCTCATGACCCGTCTACGGCGAATGGTTG 190
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 AGAGAGTAATGGTTAATGTGAGCTCAAGGAAGCTCATGACCCGTCTCCGGCGAATGGTTG 120
Query 191 CTCCGGAGACGAGTTTTTCCGGCGAGGTTGACGGTGCTACACTTTATCGACTCACGGCTG 250
||||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 121 CTCCGGAAACGAGTTTTTCCGATGAGGTTGACGGTGCCACACTATATCGGCTCACGGCTG 180
Query 251 ATCACATTTTCTTACTTCAAGCAAGAATCCAACTTCTTCGTCGTATTTCTTCTGTTTGTG 310
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 ATCACATTTTCCTACTTCAAGCAAAAATCCAACTTCTTCGTCGTATTTCTTCTGTTTGTG 240
Query 311 GTCTCTAGATCGAAGATACACGTGGC 336
||||||||||||||||||||| ||||
Sbjct 241 GTCTCTAGATCGAAGATACACATGGC 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19192261267
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5