BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57790.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495875 jgi|Araly1|495875|fgenesh2_kg.8__1691__AT5G57790.2 726 0.0
> Ahg495875 jgi|Araly1|495875|fgenesh2_kg.8__1691__AT5G57790.2
Length=825
Score = 726 bits (393), Expect = 0.0
Identities = 542/612 (89%), Gaps = 17/612 (3%)
Strand=Plus/Plus
Query 153 TCGTTTTGTCGAAGCACAAGAGGCTGAATCA-ACATGGAAGGCACAAAGAGAAGTTCTTT 211
||||| |||||||||||||||| ||||| | |||||||||| |||||||||||||||||
Sbjct 102 TCGTTCTGTCGAAGCACAAGAGATTGAATAACACATGGAAGGAACAAAGAGAAGTTCTTT 161
Query 212 GGGTGCGCGAAAGAAACTAAAGAGGAAGAAGT-G--CAGAAGACTTGTCAGAAGCATTGT 268
|||||||||||||||||| |||||||||||| | ||| |||||| | ||||| | |||
Sbjct 162 GGGTGCGCGAAAGAAACTCAAGAGGAAGAAGAAGAACAGTAGACTTATGAGAAGTAGTGT 221
Query 269 CACCTACCTCAAATCTGATACATACTTGTTTGCTCCTCTGTTTTCCAATTTTCCACCGCT 328
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||
Sbjct 222 TACCTACCTCAAATCTGATGCATACTTGTTCGCTCCTCTGTTTTCCAACTTTCCTCCGCT 281
Query 329 CACGACGGAGATAGATACGCCTCCGCCGTCGAATTCCAAACCATCCACTG-TGGACGATA 387
||||||||||||| | ||||||||||||||||||||||||||||| || | ||||||| |
Sbjct 282 CACGACGGAGATAAACACGCCTCCGCCGTCGAATTCCAAACCATCGAC-GCTGGACGACA 340
Query 388 TCTCCATGGAAGGGTTTGAGTCATTGGGGATTGAGAAG---CTTATCAAGAAGAGAAGAA 444
||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 341 TCTCCATGGCAGGGTTTGAGTCATTGGGGATTGAGAGGGTTCTTAAGAAGAAGAGAAGAA 400
Query 445 TGTCTGAGAAAGTGAAGGAATATCTCAAATCTGACTGTTATATGTACTCACCGATGATCT 504
||||||||||||| ||||||||||| |||||||| |||| ||||||| |||| ||||| |
Sbjct 401 TGTCTGAGAAAGTTAAGGAATATCTAAAATCTGATTGTTTTATGTACGCACCAATGATAT 460
Query 505 CCTCGCCTCCAAAACTTGGTTCTTCGGTTAAAGGGAAAATGCAGATTACGATGGAAGTAT 564
| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 461 CGTCCCCTCCAAAGCTTGGTTCTTCGGTTAAAGGGAATATGCAGATTACGATGGAAGTAT 520
Query 565 CGACGAAGTTGAGTACTACAACCATGAAGGAAGATGACAGTGGCTATAGGAATCTCCGGT 624
| ||| | | |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 521 CAACG--G--G--TACTACAACCATGAAGGAAGATAACAACAACTATAGGAATCGCCGGT 574
Query 625 CAGATATTGCAGAACAGACATTGCATAAG-GGTAGGATCAACTCTCCAAAACCAGCACTG 683
||||||||| ||||||||||||||||| | || ||||||||||||||||||| ||||| |
Sbjct 575 CAGATATTGTAGAACAGACATTGCATA-GCGGAAGGATCAACTCTCCAAAACGAGCACAG 633
Query 684 GTCATCTTAGAAGGACAACGAACTGGACTTGGCCGTGAAACTGATCTTTCACCAGCTTTT 743
|| ||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||
Sbjct 634 GTTATCTTAGAAGGACAACGAACTGGACTTAGCCGTGAAACCGATGTTTCACCAGCCTTA 693
Query 744 TCTTCTCCAACA 755
||||||||||||
Sbjct 694 TCTTCTCCAACA 705
Score = 169 bits (91), Expect = 6e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1183 TATATGACAGGGGAAAAGATGGTGAAGCCAGATCAAAGGAGAGTTACAATTGAGTGAAGA 1242
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 711 TATGTGACAGGGGAAAAGATGGTGAAGCCAGATCAAAGAAGAGTTGCAATTGAGTGAAGA 770
Query 1243 TAGTAATCTCGACTTAATAGACACAATGTAATCATTGTAAAATACAAATTAGTTA 1297
||||||| | ||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 771 TAGTAATGTAGACATAGTAGACACAATGTAATCATTGTAAAATACAAATTAATTA 825
Score = 100 bits (54), Expect = 2e-20
Identities = 71/79 (90%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 47 GTGAGAGACAATGGTGACGCGTGTGACCAGACGGCGTTTAAACCCTTT-TACCAAAATCT 105
||| ||||| |||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 28 GTGTGAGACCATGGCGACGCGTGTGACCAGACGGCGTTTAAACCCTTCCT-CCAAAATCT 86
Query 106 CATCTTTCTTCTTCTCCGT 124
| ||||||||||||| |||
Sbjct 87 CGTCTTTCTTCTTCTTCGT 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5