BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57810.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495877 jgi|Araly1|495877|fgenesh2_kg.8__1693__AT5G57810.1 1777 0.0
> Ahg495877 jgi|Araly1|495877|fgenesh2_kg.8__1693__AT5G57810.1
Length=1193
Score = 1777 bits (962), Expect = 0.0
Identities = 1131/1209 (94%), Gaps = 25/1209 (2%)
Strand=Plus/Plus
Query 4 TCCCCATATCAACTCAACACCTCCATagagagagagagCTTTCTTTCACTTTCACATGGC 63
||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 TCCTCATATCAACTCAACACCTCCAT------AGAGAGCTTTCTTTCACTTTCATATGGC 54
Query 64 TGATAATGCTCAAGTAGTACCCGTCGAGGAACCAGCCGCAACCGCCACAGCCACAGCTAC 123
||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 55 TGATAATGCCCAAGTAGTACCCGTCGAGGAACCAGCCGCAACCGCCACAG---C--C-AC 108
Query 124 AGCAACCGCAACGACTGAGCCAGAAGCCAAGAGTTCAGACCAAATGGAGTCACAAAGTGA 183
||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 109 AGCAACCACAACGACTGAGCCAGAAGCCAATAGTTCAGACAAAATGGAGTCACAGAGTGA 168
Query 184 TAATAAGCCACCGATGGGAACATTGATGGCACTTGTGAACATTTTAGCCGCTGGTGTCCT 243
||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 169 TAATAAGCCACCGGTTGGAACATTGGTGGCACTTGTGAACATTTTAGCCGCCGGTGTCCT 228
Query 244 TCCGATCTTCACTTTCGTCCTCTCACTTACACTCCTCGGCTACGCAGTGTGGCTTCTTTA 303
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 TCCAATCTTCACTTTCGTCCTCTCACTTACACTCCTCGGCTACGCAGTGTGGCTCCTTTA 288
Query 304 CATGCGTAGCTACGACTGCGAAGATATTCTCGGTCTGCCACGTGTCCAGACGCTAGCTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CATGCGTAGCTACGACTGCGAAGATATTCTCGGTCTGCCACGTGTCCAGACGCTAGCTAG 348
Query 364 TGTCGGTCTTCTCGCGGTGTTTGTTGTCAGCAACGCAGCTCTGTTTTTGCGGCGGAAGTT 423
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 349 CGTCGGTCTTCTCGCGGTGTTCGTTGTCAGCAACGCTGCTCTGTTTTTGCGGCGGAAGTT 408
Query 424 TCCGATGCCTGCACTTGTGGTGATGGTGGTGGTCTTGTTGTTAATGCTTTTCATCGGTTT 483
||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 409 TCCGATGCCTGCACTCGTGGTGATGGTGGTGATCTTGTTGCTAATGCTTTTCATCGGTTT 468
Query 484 GGCGTATGCCGGAGTAAATGAGATGCAAAGCCGGCGGTTTCCGGCGACAAGGATGTGGTT 543
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 469 GGCGTATGCCGGAGTAAATGAGATGCAGAGCCGGCGGTTTCCGGCGACTAGGATGTGGTT 528
Query 544 CAAGCTCAAAATCATGGACGATCATGTGACCTGGAACAATATCAAATCGTGTGTCTATGA 603
|||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||
Sbjct 529 CAAGCTCAAAATCATGGACG---ATGTGAATTGGAACAATATCAAATCATGTATCTATGA 585
Query 604 TAAAGGAGCTTGCAACGACCTCATTTACGGATCTCCAAATGAAAAACCTTACAATAGAAG 663
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 586 TAAAGGAGCTTGCAACGACCTCATTTATGAATCTCCAAATGAAAAACCTTACAATAGAAG 645
Query 664 AAAAATGCCACCAATCAAGAATGGATGTTGTATGCCACCAGAGACATGTAACATGGACGC 723
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 AAATATGCCACCAATCAAGAATGGATGTTGTATGCCACCAGAGACATGTAACATGGATGC 705
Query 724 GATAAACGCGACGTTTTGGTACAGAAGAAAAGACGAAGGACCACCGTCGTCTATGAACCT 783
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 706 GATAAACGCAACGTTTTGGTATAGAAGAAAAGACGAAGGACCACCGTCATCTATGACCCT 765
Query 784 AATGTACGGTGATGAGATGATGGTGGGAAGGATTAGCGACTGTCAACTATGGAGGAACGA 843
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 766 AATGTATGGTGATGAGATGATGGTGGGAAGGATAAGCGACTGTCAACTATGGAGGAATGA 825
Query 844 TTGGAGCATTTTATGCTATGATTGTAGATCTTGTAAGTTCGGATTCATAAGATCGGTAAG 903
|||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 826 TTGGAGCATTTTGTGCTATGATTGTAGATCTTGCAAATTCGGATTCGTAAGATCGGTAAG 885
Query 904 GAGGAAATGGTGGCAGCTCGGTATCTTCTTGATCGTCATTTCCATTCTTCTTCTCATGTC 963
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 886 GAGGAAATGGTGGCAGCTTGGTATCTTTTTGATCGTCATTTCCATTCTTCTTCTCATCTC 945
Query 964 TCATCTCTTGATCTTCTTGGCTACTTTTTGGGAACGATTCAAGGGTTAGTCACATTATG- 1022
||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 946 TCATCTCTTGATCTTCTTGGCCACTTTTTGGGAACGATTCAATGGTTAGTCAGATCATGA 1005
Query 1023 GAGTCT-TTT-CTAATTAGGTAAAATAATCTCTTTCTTCTGCATTTGTTTTAGAAC-TCA 1079
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1006 GGGTCTCTTTTCTAATTAGGTAAAATAATCTCTTTCTTCTGCATTTGTTTTAGAACCTTA 1065
Query 1080 AGCAGATGTCTCTTTGAGCAAAT----GTTTAGCTCTTCTTCCTCTGTCTCTTTTGTTAT 1135
||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1066 AGCAGATGTTTCTTTGAGCAAATTAAAGTTTAGCTCTTCATCCTCTGTCTCTTTTGTTAT 1125
Query 1136 TGTGGGATTTTTGTTGGTTTAGTGTAGAGAATGTGTTTGTAATAAAGTATAAACAATTGG 1195
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1126 TGTGGGATTTTGGTTGGTTTAATGTAGAGAATGTGTTTGTAATAAAGTATAAACAATTG- 1184
Query 1196 TTTG-ATTC 1203
|||| ||||
Sbjct 1185 TTTGGATTC 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5