BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57815.1

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950476 jgi|Araly1|950476|scaffold_802363.1                        431    3e-120
  Ahg945230 jgi|Araly1|945230|scaffold_701459.1                        292    1e-78 


> Ahg950476 jgi|Araly1|950476|scaffold_802363.1
Length=277

 Score =  431 bits (233),  Expect = 3e-120
 Identities = 254/264 (96%), Gaps = 1/264 (0%)
 Strand=Plus/Plus

Query  66   ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATT  125
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT  60

Query  126  TCCGGTTTCCTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACA  185
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  61   TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA  120

Query  186  GGTGTACAACTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACC  245
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  121  GGTGTACAACTGCAAAGGGCGAGGAGTCTAATGACTGCGAAAGGTTTGCCAAGTATTACC  180

Query  246  GTGCCCTCTGTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTT  305
            | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  181  GCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACTT  240

Query  306  TTCCAGGTCCTCTTTGAACC-AAG  328
            |||||||||||||||||||| |||
Sbjct  241  TTCCAGGTCCTCTTTGAACCTAAG  264


> Ahg945230 jgi|Araly1|945230|scaffold_701459.1
Length=278

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 218/248 (88%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  75   TCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATTTCCGGTTTC  134
            |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  11   TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATTTCCGGTTTC  70

Query  135  CTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACAGGTGTACAA  194
            | ||||| || ||||| |||||||||||||| || ||||| ||||| |||||||| ||||
Sbjct  71   CAACAACTAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACAGGTGCACAA  130

Query  195  CTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACCGTGCCCTCT  254
            ||||||| || ||||| || ||||| || || ||||| |||||||| ||||| || ||||
Sbjct  131  CTGCAAAAGGTGAGGATTCAAATGAATGCGAGAGGTTCGCCAAGTACTACCGCGCTCTCT  190

Query  255  GTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTTTTCCAGGTC  314
            | |||||||||||||||||||||||||| |||||||||||||  ||||| || || || |
Sbjct  191  GCCCTGGAGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACCGGAACATTCCCTGGCC  250

Query  315  CTCTTTGA  322
            ||||||||
Sbjct  251  CTCTTTGA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19726439513


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5