BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57820.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358000 jgi|Araly1|358000|fgenesh1_pg.C_scaffold_8001787           691    0.0  
  Ahg495879 jgi|Araly1|495879|fgenesh2_kg.8__1695__AT5G57830.1        80.5    1e-14


> Ahg358000 jgi|Araly1|358000|fgenesh1_pg.C_scaffold_8001787
Length=489

 Score =  691 bits (374),  Expect = 0.0
 Identities = 448/483 (93%), Gaps = 7/483 (1%)
 Strand=Plus/Plus

Query  1    ATGGATTCGAAAGCAAAAGACGATGAAAAAACTCTAAACATGGATTCCAAAGCAAAATAC  60
            |||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| ||
Sbjct  1    ATGGATTCGAAAGCAAGAGACGATGAAAAAACGCTAAACTTGGATTCGAAAGCAAAAGAC  60

Query  61   GGTAAAGAAGCTCTAGACATGCTCTTAAAGCTTCAACAGAGAGTTGATGAAATCCATTCT  120
            ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   GGTGAAGAAGCTCTAAACATGCTCTTAAAGCTTCAACAGAGAGTTGATAAAATCCATTCT  120

Query  121  GAGTTGCAATCTTCGGGAGCATCCGCAACAACTTCATCTGATATTCAAAACATCTACAAC  180
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  GAGTTGCAATCTTCGGGAACATCCGCAACAACTTCATCTGATATTCAAAACATCTACGAC  180

Query  181  GAAATCCAACAACTTCTACAGATGATTACTAAGAAGACGCCTCAAGATCCGAGTAAAGTG  240
            |||||||||||| |||| || | ||| |||| |||||||||||||||| |||||||||||
Sbjct  181  GAAATCCAACAAGTTCT-CA-A-GATGACTACGAAGACGCCTCAAGATTCGAGTAAAGTG  237

Query  241  TCGTCACATATTCGCGACGATCTTGACATGGTGTTTGT-GTTGGAGGAAGTTGGACACTC  299
            ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct  238  TCGCCACATATTCGCGACGAGCTTGACATGGTGTTTGTTGT-GGAGGAAGTTGGACACTC  296

Query  300  GTGCGACTTGTGCCAGAGAGATCTTGCTAA-GGATCCAGAACGGCCTAATGCTTCCTTGA  358
            ||||||||| |||||||||||||| || || |||||||||||||||||||||| ||||| 
Sbjct  297  GTGCGACTTATGCCAGAGAGATCTCGC-AACGGATCCAGAACGGCCTAATGCTCCCTTGC  355

Query  359  GTGGCTTACAAGAGGCGTGCGTGCTGTCTTGTGGTCATGTCTACCACTTCAAGTGTTTGA  418
            | |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct  356  GCGGCTTACAAGAGGCGTCCGTGCTGTCTTGTGGTCATGTCTATCACTTCAAGTGCTTGA  415

Query  419  GAGGAACCACTCTTGATATTGATAACCATTCTAAAGATCCTTCTTGCATTTTCTGCATTA  478
             |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct  416  AAGGAACCACTCTTGATATCGATAACCATTCTAATGATCCTTCCTGCATTTTCTGCATTA  475

Query  479  GCT  481
            |||
Sbjct  476  GCT  478


> Ahg495879 jgi|Araly1|495879|fgenesh2_kg.8__1695__AT5G57830.1
Length=1332

 Score = 80.5 bits (43),  Expect = 1e-14
 Identities = 50/53 (94%), Gaps = 1/53 (2%)
 Strand=Plus/Minus

Query  615   ACTTACAAATACCAGAGATTTACTCTGAAATCAATCAATTTTCTTTTTACATC  667
             |||||||||||||||||||||||||||||||| ||||||||  ||||||||||
Sbjct  1332  ACTTACAAATACCAGAGATTTACTCTGAAATCTATCAATTTG-TTTTTACATC  1281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5