BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57830.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495879 jgi|Araly1|495879|fgenesh2_kg.8__1695__AT5G57830.1 2146 0.0
> Ahg495879 jgi|Araly1|495879|fgenesh2_kg.8__1695__AT5G57830.1
Length=1332
Score = 2146 bits (1162), Expect = 0.0
Identities = 1284/1342 (96%), Gaps = 11/1342 (1%)
Strand=Plus/Plus
Query 72 CTAATCATAGAACAAATCACACATTGATCAAAGATCAACCAAAAGCAA-GAAATTTTTGA 130
||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1 CTAATCATAAAACAAATCACACATTGATCAAAGATCAACCAAAA-CAAGGAAA-TTTTGA 58
Query 131 TCTAAAATGGTGGAGAGAACGATGAGTTTGGGGGTAGGAGGAAATGGAGAAACCTCAGGA 190
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 TC-AAAATGGTGGAGAGAACGATGAGTTTGGGGGTAGGAGGCAATGGAGAAACCTCAGGA 117
Query 191 GTCAGAGAAACGATGTGGGCACAACAAGAGCTTCTTCAAAAGATCAATCAAGAACTTGAC 250
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 GTCAGAGAAACGATGTGGGCACAACAAGAGCTTCTTCAAAAGATCAACCAAGAACTTGAC 177
Query 251 GCAGAACGTGAAGCTTCTTCATCTGCTGCAAGCGAGGCTTTATCGATGATTCTACGGCTT 310
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GCAGAACGTGAAGCTTCTTCCTCTGCTGCAAGCGAGGCCTTATCGATGATTCTACGGCTT 237
Query 311 CAAGGTGAGAAAGCTGCGTTGGAGATGGAAGCTAGTCAGTACAAGAGAATGGCGGAGGAG 370
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 CAAGGTGAGAAAGCAGCGTTGGAGATGGAAGCTAGTCAGTACAAAAGAATGGCGGAGGAG 297
Query 371 AAAATGTGTCATGCTGAGACATCTCTTGTGCTTTTCGAAGATCTGATTTATCAGAAGGAA 430
|| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 298 AAGATGTGTCATGCCGAGACCTCTCTTGCGCTTTTCGAAGATCTGATTTATCAGAAGGAA 357
Query 431 ATGGAGATTGCGTCTCTTGAGTTTCAGGTTCAGGCTTATAGATGTAAATTACTCAGCCTT 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGAGATTGCGTCTCTTGAGTTTCAGGTTCAGGCTTATAGATGTAAATTACTCAGCCTC 417
Query 491 GGTTGCTCTGATCCTGCTGTGATTGAGAATAAGTTCCCTGAAACTCTCATCTTTTCCGGT 550
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 418 GGTTGCTCTGATCCGGCTGTGATTGAGAATAAGTTCCCGGAAAATCTCATCTTTTACGGC 477
Query 551 GAAAACTCTCGTGGCAATCAAAAGAGGAAGATGAAGAGAAATCTTTCGAGTCCATTTGAT 610
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 478 GAAAACTCTCGTGGGAATCAAAAGAGCAAGATGAAGAGAAATCTATCGAGCCCATTTGAT 537
Query 611 GGCATATCTAGTGAAAGAAGTTTACTTTTGTCTGATGTTAATGGTGAAAGCTTTGAGGAG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGCATATCTAGTGAAAGAAGTTTACTTTTGTCTGATGTTAATGGTGAAAGCTTTGAGGAG 597
Query 671 AAGAAAGGTCTTGTAGAGAGTAGTTCTGTATCTCCTCGTGAAGACTTGAATGCGTATTGG 730
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 598 AAGAAAGGTCTTGT--TGAG-AGTTCTGTATCTCCTCGTGAAGACTTGAATGCTTATTGG 654
Query 731 GAACAGATTAGGAGAATAGATGAGCATGTTAGAGAGATTTCAGACTCTAGAGATACTCAG 790
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 655 GAACAGATTAGGAGAATAGATGAGCATGTTCGAGAGATTTCAGACTCAAGAGATGCTCAG 714
Query 791 AAGGCATCTAAATTCCCTTTGATTAGGCGTGAGTCAATTTCACATGCGTTGGTGTCACAA 850
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 715 AAGGTATCTAAATTCCCTTTGCTTAGGCGTGAGTCAATGTCACATGCGTTGGTGTCACAA 774
Query 851 GTTAGCAATACTATACTTGAGTCAGCTAAGAGTGATGTTAGTTCGATTATGGAGATGATG 910
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 GTTAGCAATACTATCCTTGAGTCAGCTAAGAGTGATGTCAGTTCGATTATGGAGATGATG 834
Query 911 AAGAACCCTGAAAGATTCTCTGTAAAAGATGCTTCTTTAGAGACTCCGATTCTGTCTCCG 970
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AAGAACCCTGATAGATTCTCTGTAAAAGATGCTTCTTTAGAGACTCCGATTCTGTCTCCG 894
Query 971 AAGAATGTTCAAGACATCTTCGAGGTTCCTAGGACGAAAGAAAGTCTTACAATCATCTCG 1030
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 895 AAAAATGTTCAAGACATCTTCGAGGTTCCTAGGACGAAGGAAAGCCTTACAATCATCTCG 954
Query 1031 GAAGAAGAGGAAGCCGAAGAAAGAAATGTTAGAGGCAAGATGGTGACTAGTAATTACGAT 1090
|||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 955 GAAGAAGAGGAAGCCGAAGAAAGAAATGCCAGAGGCAAGATGGCGAGTAGTAATTACGAT 1014
Query 1091 AGAAAAGTGAGTAAGCCGCCAAGAGATACGAGCATCAAGGGAGAACATTTGAGTTTGCTA 1150
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGAAAAGTGAGTAAACCGCCAAGAGATACGAGCATCAAGGGAGAACATTTGAGTTTGCTA 1074
Query 1151 AAGGAGATTCGAGAACAGCTCAATGTAATGCAGTCAGAGATGAGAAGCTTAAGATCAGAA 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGGAGATTCGAGAACAGCTCAATGTAATGCAGTCAGAGATGAGAAGCTTAAGATCAGAA 1134
Query 1211 CTGCATCATCAATCTAAACCTGTGTCCAATCCCGAAGAGGATCTAGTCCTTAACTCAATT 1270
|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1135 CTGCATCA--A-TCTAAACCTGTGTCCAATCCCGAAGAGGATCGAGTCCTTAACTCAATT 1191
Query 1271 CAAGAGGCAATGATTCACTTCTGGCTTTAGAAGCTACCATGCGGCGTGGTTCTAGTTTTC 1330
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1192 CAAGAGGCAATGATTCACTTCTGGCTTTAGAAGCTACCATGCGGTGCGGTTCTAGTTTTC 1251
Query 1331 CATATGTAAAGTTACTTAAACTTTTCAGGGATGTAAAAAGAAAATTGATTGATTTCAGAG 1390
||||||||||||||||||||| ||||| ||||||||||| ||| ||||| ||||||||||
Sbjct 1252 CATATGTAAAGTTACTTAAACCTTTCAAGGATGTAAAAACAAA-TTGATAGATTTCAGAG 1310
Query 1391 TAAATCTCTGGTATTTGTAAGT 1412
||||||||||||||||||||||
Sbjct 1311 TAAATCTCTGGTATTTGTAAGT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5