BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57850.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332076 jgi|Araly1|332076|fgenesh1_pm.C_scaffold_8001419 1352 0.0
> Ahg332076 jgi|Araly1|332076|fgenesh1_pm.C_scaffold_8001419
Length=891
Score = 1352 bits (732), Expect = 0.0
Identities = 839/892 (94%), Gaps = 2/892 (0%)
Strand=Plus/Plus
Query 272 ATGTACTCAAGTGTTGTTGATGGAATTACAACCGATCCAGCAGCGATGGTTCTTCCATTG 331
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGTACTCAAGTGTTGTTGATGGAATAACAACTGATCCAGCAGCAATGGTTCTTCCATTG 60
Query 332 GATGATCACATGGTTCACCGTGGTCATGGAGTCTTTGACACTGCCCTGATCATCAATGGA 391
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 61 GATGATCACATGGTTCACCGTGGTCATGGAGTCTTTGACACTGCCATTATCATTAATGGA 120
Query 392 TACCTTTATGAATTGGATCAGCACCTTGACCGTATCTTGCGATCTGCATCAATGGCTAAG 451
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||
Sbjct 121 TACCTTTATGAATTGGATCAGCACCTTGACCGTATCCTACGATCTGCGTCCATGGCTAAG 180
Query 452 ATCCCACTTCCATTCGATCGAGAAACTATTAAAAGAATTCTCATTCAAACCGTGAGCGTT 511
||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||
Sbjct 181 ATCCCACTTCCATTCGATCGAGAAACTATTAAAAGGATTCTCATCCAGACTGTGAGCGTT 240
Query 512 TCTGGATGTAGAGATGGATCTCTAAGATACTGGCTCTCTGCAGGGCCAGGGGATTTCCTC 571
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCTGGTTGTAGAGATGGCTCTCTAAGATACTGGCTCTCTGCAGGCCCAGGGGATTTCCTC 300
Query 572 CTATCTCCATCTCAATGTCTCAAACCAACTCTCTATGCCATTGTTATAAAAACGAACTTC 631
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 301 CTATCTCCATCTCAATGTCTCAAACCAACTCTCTACGCCATTGTGATAAAAACGAAGTTG 360
Query 632 GCCATTAACCCAATAGGTGTCAAGGTAGTGACCTCGTCCATCCCCATAAAGCCTCCAGAG 691
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCCATTAACCCAACAGGTGTCAAGGTAGTGACCTCGTCCATTCCCATAAAGCCTCCAGAG 420
Query 692 TTTGCCACGGTGAAAAGTGTTAACTACCTCCCTAACGTACTCTCACAAATGGAAGCTGAG 751
||||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 421 TTTGCGACAGTGAAAAGCGTTAACTACCTCCCTAACGTGCTCTCTCAAATGGAGGCTGAG 480
Query 752 GCCAAAGGAGCTTATGCAGGTATTTGGGTGTGTAAAGATGGGTTTATTGCAGAAGGCCCG 811
||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 481 GCCAACGGAGCTTATGCAGGTATTTGGGTGAGTGAAGATGGGTTTATTGCAGAAGGTCCG 540
Query 812 AACATGAATGTGGCGTTTGTTGTTAATGGTGGTAAGGAGCTTGTGATGCCGCGGTTTGAT 871
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AACATGAATGTGGCATTTGTTGTTAATGGTGGCAAGGAGCTTGTGATGCCGCGGTTTGAT 600
Query 872 AACGTTTTGAGCGGATGTACAGCAAAGAGAACACTTACACTCGCTGAACAGCTTGTAAGC 931
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 601 AACGTTTTGAGCGGATGTACAGCAAAGAGAACGCTTACACTCGTTGAACAGCTTTTAAGC 660
Query 932 AAGGGGATTCTTAAAACTGTGAAAGTAATGGATGTGACAGTCGAAGATGGAAAGAAAGCA 991
|||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 661 AAGGGGATGCTTAAAAGTGTGAAAGTAATGAATATGACAGTCGAAGATGGAAAGAAAGCA 720
Query 992 GATGAGATGATGCTTATTGGTAGTGGAATTC-CGATCAGACCTGTGATTCAATGGGATGA 1050
||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||
Sbjct 721 GATGAGATGATGCTTATTGGTAGCGGAGTTCTC-ATCAGACCTGTGATTCAATGGGATGA 779
Query 1051 AGAATTTATTGGTGAAGGAAAAGAAGGTCCTATAGCAAAGGCGCTTCTTGATCTGTTACT 1110
|||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 AGAACTTATTGGTGATGGAAAAGAAGGTCCTATAGCAAAGGCACTTCTTGATCTGTTACT 839
Query 1111 TGAAGATATGAGATCTGGTCCACCTTCCGTTCGTGTTCTTGTTCCTTACTGA 1162
|||||||||||||||||| |||||||| |||||||||||| |||| ||||||
Sbjct 840 TGAAGATATGAGATCTGGACCACCTTCTGTTCGTGTTCTTATTCCATACTGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5