BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57860.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495882 jgi|Araly1|495882|fgenesh2_kg.8__1698__AT5G57860.3 854 0.0
> Ahg495882 jgi|Araly1|495882|fgenesh2_kg.8__1698__AT5G57860.3
Length=680
Score = 854 bits (462), Expect = 0.0
Identities = 522/550 (95%), Gaps = 7/550 (1%)
Strand=Plus/Plus
Query 76 GGAAGAAGAGTGAATTG-TTCATCCTTATCTTGCCATGGCTATGTATATTCGTGTGAAGC 134
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 134 GGAAGAAGAGTGAATTGTTTCATCCTTGTCTTGCCATGGCCATGTATATTCGTGTGAAGC 193
Query 135 GCATGAAAACTACTTACTTTATCCAATGTGATCCAACAGAGACTGTTTTGGATGTTAAGC 194
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GCATGAAAACCACTTACTTTATCCAATGTGATCCAACAGAGACTGTTTTGGATGTTAAGC 253
Query 195 AAAAACTGTTTGCTCTCATTGAGCAACCAGTTAACAATCAGCGTCTGGTCTTAATGTCTA 254
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 254 AAAAACTGTTTGCCCTCATTGAGCAACCAGTTACCAATCAGCGTCTGGTCTTAATGTCTA 313
Query 255 CCGAAGAAGTATTAGAGGATTCGAAATCCTTAGCAGATCAGAAGGTTGAGAATGATGCAG 314
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 314 CCGAAGAAGTATTAGAGGATTCGAAAACTTTAGCAGATCAGAAGGTTGAGAATGATGCAG 373
Query 315 TTGTGGCTTTGACTTTGAAGAAAGATGATAACGAGTTTGAGGATGTCAACATTGCACAGC 374
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTGTGGCTTTGACTTTGAGGAAAGATGATAACGAGTTTGAGGATGTCAACATTGCACAGC 433
Query 375 CCACCGACTTCTCACTTTCATGAAGAGTTGCTTACTGTATCAAGGAAACTTCAGGAGAAG 434
|||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 434 CCACCGACTTCTCAATTTCATGAAGAGTTACTTACTGTATCAAGGAAACCTCAGGAGAAG 493
Query 435 GTA-T-T-GATTCAAAACACAAGGAGGAGTCTATAAACGCCAGAAGTTGTTTCTTTTGCG 491
||| | | |||||||| || |||||| ||||||||| ||| |||||||||||||| |||
Sbjct 494 GTACTATTGATTCAAA-CATAAGGAGAAGTCTATAAGCGCTTGAAGTTGTTTCTTT-GCG 551
Query 492 TCTCTGCTTGTGTTAACGCCTCTTTAGTTTGTTACAGACAATTGTTGTAAGTAAAGATAT 551
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 TCTCTGCTTGTGTTAACGCCTCTTTAGTT-GTTACAGACAATTGTTGTAAGTAAAGATAT 610
Query 552 TGAGATGTGGAAGTTTGATTGCAACTTGCCAGATTAGTAGTTTTTACAGTCTCTTAATAT 611
|||||||||||||||||||||||| |||| |||||| |||||||||| ||||| ||||||
Sbjct 611 TGAGATGTGGAAGTTTGATTGCAATTTGCAAGATTACTAGTTTTTACGGTCTCGTAATAT 670
Query 612 GTTTACAATG 621
||||||||||
Sbjct 671 GTTTACAATG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5