BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57880.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950484 jgi|Araly1|950484|scaffold_802371.1 1816 0.0
Ahg495889 jgi|Araly1|495889|fgenesh2_kg.8__1705__AT5G57887.1 448 8e-125
Ahg950486 jgi|Araly1|950486|scaffold_802373.1 145 1e-33
> Ahg950484 jgi|Araly1|950484|scaffold_802371.1
Length=1207
Score = 1816 bits (983), Expect = 0.0
Identities = 1118/1182 (95%), Gaps = 13/1182 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTCAAGCGTAGCTGAAGCAAATCACACAGAGAAGGAAGAGTCGCTGAGACTGGCA 60
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 21 ATGAGTTCTCGCGTAGCTGAAGCAAATCACACGGAGAAGGAAGAGTCGCTGAGACTGGCG 80
Query 61 ATCGCTGTTTCTCTGCTACGATCTAAGTTTCAGAATCATCAATCTTCTTCTTCTACTTCC 120
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 81 ATCGCTGTTTCTCTGCTACGATGTAAGATCCAGAATCATCAATCTTCTTCTTCTACTTCC 140
Query 121 CGTTGTTATGTTTCTTCTGAATCTGATGCACTTCGCTGGAAGCAGAAGGCTAAAGAGAGG 180
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 141 CGTTGTGATGTTCCTTCTGAATCTGATGCTCTTCGCTGGAAGCAGAAGGCTAAAGAGAGG 200
Query 181 AAGAAAGAGATTATCAGACTCCAGGAAGATCTCAAGGATGCTGAAAGTTCTTTTCATCGT 240
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 201 AAGAAAGAGATTATCAGACTCCAGGAAGATCTCAAGGAAGCTGAAAGTGCTTTTCATCGT 260
Query 241 GACTTATTCCCAGCGAATGCTTCTTGCAAGTGTTATTTCTTTGATAACTTGGGAGTATTC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GATTTATTCCCAGCGAATGCTTCTTGCAAGTGTTATTTCTTTGATAACTTGGGAGTATTC 320
Query 301 AGCGGTAGGAGGATTGGAGAAGCCTCTGAATCGAGATTTAATGATGTTCTTCGTCGTAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AGCGGTAGGAGGATTGGAGAAGCCTCTGAATCGAGATTTAATGATGTTCTTCGTCGTAGA 380
Query 361 TTTCTCAGACTAGCTTGTGTTGTCATTTTATCCTT-AGCGCGGAGAAGGAGCAGAAGGAA 419
||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||
Sbjct 381 TTTCTCAGACTAGCTTGTGTTGTCATTTTATGTTTTAGCGAGGAAAAGGAGCAGAAGGAA 440
Query 420 GTTAACTCGATCATCTCAAAGATTGCAGCCCTCAG----AA-CCGGATTATGAAGAGGAA 474
|| |||||||||||| |||||||| ||| |||| | || ||||| ||||||||||||
Sbjct 441 GTCAACTCGATCATCGCAAAGATTTCAGTCCTCTGTTTCAAACCGGAATATGAAGAGGAA 500
Query 475 GCAGAACATCTTAGGATCTCTATAGATTTTCTCCTGGAACTGTCTGAAGCAGACTCCAAT 534
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 501 GCAGAACATCTTAGGATATCTATAGATTTTCTCCTGCAACTGTCCGAAGCAGACTCCAAT 560
Query 535 GACTCTAACTTCAGCAATTGGTCACATCAGGCTGTAGATTTCATATTCGCTTCACTGAAG 594
| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 561 GCCTCTAATTTCAGCAATTGGTCACATCAGGCTGTAGATTTCATATTAGCTTCACTGAAG 620
Query 595 AAGTTAATATCGATGGGAAGGAACTTAGAATCTGTTGAAGAATCTATCAGCTTCATGATT 654
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGCTGATATCGATGGGAAGGAACTTAGAATCTGTTGAAGAATCTATCAGCTTCATGATT 680
Query 655 ACACAGTTGATCACAAGAATGTGCACTCCCGTC-AAAGGAAATGAGGTGAAACAACTAGA 713
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 681 ACACAGTTGATCACAAAAATGTGCACTCCC-TCTAAAGGAAATGAGGTGAAACAACTAGA 739
Query 714 AACAAGTGTTGGGTTTTATGTCCAACATTTGATCCGTAAACTTGGAAGTGAACCATTCAT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 740 AACAAGTGTTGGGTTTTATGTCCAACATTTGATCCGTAAACTTGGAAGTGAACCATACAT 799
Query 774 TGGACAGCGTGCAATCTTTGCTATTTCTCAGAGGATATCCATTTTAGCCGAAAATTTACT 833
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 800 TGGACAGCGTGCAATATTTGCTATTTCTCAGAGAATATCCATTTTAGCCGAAAATTTACT 859
Query 834 ATTTATGGATCCATTTGATGAATCATTCCCAGAGATGGATGAGTGCATGTTTATACTGAT 893
||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 860 GTTTATGGATCCATTTGATGAATCATTCTCAGTGATGGATGAGTGCATGTTTCTACTGAT 919
Query 894 ACAGCTAATTGAGTTCCTTATATGTGACTATTTGTTGCCATGGGC-GA-A-TGAAGCATT 950
|||||||||||||||||| |||||||||||||||||||| ||||| || | || ||||||
Sbjct 920 ACAGCTAATTGAGTTCCTGATATGTGACTATTTGTTGCCCTGGGCAGAGAATGTAGCATT 979
Query 951 TGACAATGTTATGTTTGAGGAGTGGATAGCATCAGTAGTACA-TGCGAGGAAAGCAGTAA 1009
||| |||||| |||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 980 TGAAAATGTTGTGTTTGAGGAGTGGATAGCATCAGTAGT-CAATGCAAGGAAAGCAGTAA 1038
Query 1010 AGGCCTTGGAAGAAAGAAATGGGTTGTATCTCCTTTACATGGACCGAGTCACTGGGGAAT 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1039 CGGCCTTGGAAGAAAGAAATGGGTTGTATCTTCTTTACATGGACCGAGTCACAGGGGAAT 1098
Query 1070 TAGCTAAACGAGTTGGTCAGATCACATCTTTCCGGGAGGTGGAGCCAGCCATTTTGGACA 1129
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1099 TAGCTAAACGAGTTGGTCAGGTCACATCTTTCCGGGAGGTGGAGCCAGCCATTTTGGAAA 1158
Query 1130 AAATCTTAGCCTACCAAGAAATAGAATGATATCTTTCCAGGT 1171
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1159 AAATCTTAGCCTACCAAGAAATAGAATGATACCTTTCCAGGT 1200
> Ahg495889 jgi|Araly1|495889|fgenesh2_kg.8__1705__AT5G57887.1
Length=509
Score = 448 bits (242), Expect = 8e-125
Identities = 298/324 (92%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 1167 CAGGTCATGTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTCTTCATAAGGAGAA 1226
||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 190 CAGGTCATGGCGATGACGAAGCTGGTGCGACAAGGAAGCTTGGAGTCTTCATAAGGAGAA 249
Query 1227 GGGCAAGAAGATTCAGAGGACATCGCCCCACATCTGCTTCCATTACACTTTTGTCAGGCT 1286
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 GGGCAAGAAGATCCAGAGGACATCGCCCCACATCTGCTTCCACAACACTTTTGTCAGGCT 309
Query 1287 CCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTCTTGCAGTTCTCTTCTTTTCTAGG 1346
||| ||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||
Sbjct 310 TCTTTCATATGACTGCTTGCCTTGCCACCTCT--TTCCTGCT-TTCTCTTCTTATCTAGG 366
Query 1347 TTCCATCTACTATCAAAAGTAGTTTT-CTTTTTCTACTCTCCTTACAAG-AATTG-TGTA 1403
|| |||||||| |||||||| ||||| |||||| |||| |||||||||| ||| | ||||
Sbjct 367 TTTCATCTACTGTCAAAAGTGGTTTTTCTTTTTTTACTTTCCTTACAAGTAAT-GATGTA 425
Query 1404 GTACATAGTAACACGTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTACATAAGCATGTA 1463
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 426 GTACATAGTAACACTTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTACATAAGCATTTA 485
Query 1464 TTTGTACAAATTTAATGCTTGAAA 1487
| ||||||||||||||||||||||
Sbjct 486 TGTGTACAAATTTAATGCTTGAAA 509
> Ahg950486 jgi|Araly1|950486|scaffold_802373.1
Length=295
Score = 145 bits (78), Expect = 1e-33
Identities = 170/210 (81%), Gaps = 23/210 (11%)
Strand=Plus/Plus
Query 1167 CAGGTCAT-GTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTC-TTCATAAGGAG 1224
|||||| | | |||| | |||||||||||||||||||||||||||| | ||||||| |
Sbjct 99 CAGGTC-TAGGCGATGATGAAGCTGGTGTGACAAGGAAGCTTGGAG-CATTCATAA--AA 154
Query 1225 AAGGGCAAG-AAGATTC-AGAGGACAT--CGCC-CCACATCTGCTTC--CATTACACTTT 1277
|| ||| | ||||| | |||| | | | || ||||||||| ||| || |||||||
Sbjct 155 AAAGGC--GCAAGATACGGGAGG-CGTCCCACCACCACATCTGATTCTGCA--ACACTTT 209
Query 1278 TGTCAGGCTCCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTC-TTGCAGTTCTCTT 1336
||||||||||||||||||||| | ||||||||||||||||| ||| || | ||||||
Sbjct 210 TGTCAGGCTCCTTCCATATGATTACTTGCCTTGCCACCTCT--TTCCTT-CT-TTCTCTC 265
Query 1337 CTTTTCTAGGTTCCATCTACTATCAAAAGT 1366
|||||||||||| | |||||| ||||||||
Sbjct 266 CTTTTCTAGGTTTCTTCTACTGTCAAAAGT 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5