BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57890.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472860 jgi|Araly1|472860|fgenesh2_kg.1__2814__AT5G57890.1 1345 0.0
Ahg484144 jgi|Araly1|484144|fgenesh2_kg.5__136__AT1G25220.1 1343 0.0
Ahg900162 jgi|Araly1|900162|Al_scaffold_0004_812 1153 0.0
Ahg484723 jgi|Araly1|484723|fgenesh2_kg.5__715__AT1G25220.1 525 3e-148
Ahg484722 jgi|Araly1|484722|fgenesh2_kg.5__714__AT5G57890.1 470 1e-131
Ahg887377 jgi|Araly1|887377|Al_scaffold_0358_2 459 3e-128
> Ahg472860 jgi|Araly1|472860|fgenesh2_kg.1__2814__AT5G57890.1
Length=980
Score = 1345 bits (728), Expect = 0.0
Identities = 856/914 (94%), Gaps = 23/914 (3%)
Strand=Plus/Plus
Query 58 ATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCACCACT 117
||||||||||||||| | ||||| || |||||||||||||| |||| | ||| |||||||
Sbjct 1 ATGGCGGCTACTACACTATACAAGTCTTGTCTTCTTCAACCCAAGTCTAGCTCCACCACT 60
Query 118 CGCCGCCTAAACCAGTCTCTCGTTAACTCTCTTACGAACCCAACAAGAGTTTCGGTTTTG 177
|| | ||||||| ||||| |||||| |||||||||| || ||||||||||||||||||
Sbjct 61 CG--G-CTAAACCCTTCTCTTGTTAACCCTCTTACGAATCCGACAAGAGTTTCGGTTTTG 117
Query 178 TGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTC 236
||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||
Sbjct 118 GGGAAGAGTCGTAGAGATGTCT-TTGCGAAAGCTTCTATTGAAATGGCGGAATCAAATTC 176
Query 237 GATATCTTCCGTTGTTGTCAATT-C-CT---C----------TGGTCCTATCATCGTGAT 281
|||| |||||||||||||||||| | || | ||||||||||||||||||
Sbjct 177 GATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTTATGGTCCTATCATCGTGAT 236
Query 282 TGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCA 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 TGATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCA 296
Query 342 TTTTGAAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTGAAAAGA-AAAAAGCCAA 400
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||
Sbjct 297 TTTTGAAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGAAAA-ATAAAAATCCAA 355
Query 401 GAGGATTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAA 460
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGGAGTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAA 415
Query 461 CTGTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTA 520
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 416 CTGTTTTGGAACTCGGACCACGTGTTCCTTTATTTGGAGTATGCATGGGTTTGCAGTGTA 475
Query 521 TAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAGGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAA 535
Query 581 GCTCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACC 640
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GCTCAATGGTTTACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACC 595
Query 641 CTTTCCTTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATG 700
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 CTTTCCTTGTAGGTAGATATCACAGCCTCGTGATCGAAAAAGATTCATTTCCTAGTGATG 655
Query 701 AACTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGAAAGT 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 AACTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGGAAGT 715
Query 761 ACAAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGA 820
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATAAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGA 775
Query 821 CAATTGTTCGCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAGG 880
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CAATTGTCCGCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGACATAGA 835
Query 881 CTTAGCCTGAATGAGAAAATCAGCTGTGTTCGATTAGTGCTTCCCTGTAATAATGTCTGC 940
|| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||
Sbjct 836 CT-AGCCTGAATGAGAAAATCAGCTGTGTTTGATTAGTACCTCCCTGTAATAATGTTTGC 894
Query 941 CAATGCAAAATGTT 954
||||||||||||||
Sbjct 895 CAATGCAAAATGTT 908
> Ahg484144 jgi|Araly1|484144|fgenesh2_kg.5__136__AT1G25220.1
Length=1004
Score = 1343 bits (727), Expect = 0.0
Identities = 877/946 (93%), Gaps = 24/946 (3%)
Strand=Plus/Plus
Query 54 AACAATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCAC 113
||||||||||||||||||| || ||| || |||||||||||||| |||| ||||| |||
Sbjct 17 AACAATGGCGGCTACTACACAGTTCAAGTCTTGTCTTCTTCAACCTAAGTCTGGCTCCAC 76
Query 114 CACTCGCCGCCTAAACCAGTCTCTCGTTAACT-CTCTTACGAACCCAACAAGAGTTTCGG 172
||||||||| ||||||| ||||||||||| | |||||||||| || |||||||||||||
Sbjct 77 CACTCGCCGACTAAACCCTTCTCTCGTTAA-TCCTCTTACGAATCCGACAAGAGTTTCGG 135
Query 173 TTTTGTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCG 231
||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 136 TTTTGGGGAAGAGTCGTAGAGATGTGT-TTGCGAAAGCTTCGATGGAAATGGCGGAATCG 194
Query 232 AATTCGATATCTTCCGTTGTTGTCAATT-C-CT---C----TGGTCCTATCATCGTGATT 282
||||||||| |||||||||||||||||| | || | ||||||||||||||| |||
Sbjct 195 AATTCGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTCATT 254
Query 283 GATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCAT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 255 GATAATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCAT 314
Query 343 TTTGAAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTGAAAAGAAAAAAGCCAAGA 402
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 315 TTCGAAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGAAAAGAAAAAATCCAAGA 374
Query 403 GGATTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACT 462
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGGGTATTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACC 434
Query 463 GTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GTTTTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATA 494
Query 523 GGAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGC 582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 495 GGAGAAGCATTTGGAGGAAAGATTGTGCGGGCACCATTTGGTGTTATGCATGGGAAAAGC 554
Query 583 TCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACCCT 642
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 555 TCAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGACAATCTAACCCT 614
Query 643 TTCCTTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATGAA 702
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 615 TTCCTTGTAGGTAGATATCACAGCCTCGTTATCGAAAAAGATTCATTTCCTAGTGATGAA 674
Query 703 CTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGAAAGTAC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 675 CTCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAGGAAGTAC 734
Query 763 AAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGACA 822
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 735 AAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAAACA 794
Query 823 ATTGTTCG-CAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAGGC 881
||||| || ||| |||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 795 ATTGT-CGGCAACTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGTTGACATAGAC 853
Query 882 TTAGCCTGAATGAGAAA--A--T---CAGCTGTGTTCGATTAGTGCTTCCCTGTAATAAT 934
|| |||||||||||||| | | ||| |||||||||||||||| ||| |||||||||
Sbjct 854 TTCGCCTGAATGAGAAATCAGCTAATCAGTTGTGTTCGATTAGTGCCTCCGTGTAATAAT 913
Query 935 GTCTGCCAATGCAAAATGTTCCTTGGCATCTT-ACCATTGTTTCTA 979
|| ||| |||||||||||||||||| |||||| || ||||||||||
Sbjct 914 GTTTGCTAATGCAAAATGTTCCTTGTCATCTTCAC-ATTGTTTCTA 958
> Ahg900162 jgi|Araly1|900162|Al_scaffold_0004_812
Length=828
Score = 1153 bits (624), Expect = 0.0
Identities = 769/836 (92%), Gaps = 22/836 (3%)
Strand=Plus/Plus
Query 58 ATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCACCACT 117
||||||||||||||| || ||| || |||||||||||||| |||| | ||| |||||||
Sbjct 1 ATGGCGGCTACTACACAGTTCAAGTCTTGTCTTCTTCAACCCAAGTCTAGCTCCACCACT 60
Query 118 CGCCGCCTAAACCAGTCTCTCGTTAACT-CTCTTACGAACCCAACAAGAGTTTCGGTTTT 176
||||| ||||||| ||||||||||| | |||||||||| | |||||||||||||||||
Sbjct 61 CGCCGACTAAACCCTTCTCTCGTTAA-TCCTCTTACGAATTCGACAAGAGTTTCGGTTTT 119
Query 177 GTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATT 235
| |||||||| |||||||||| | ||||||| |||||||| |||||||||||||||||||
Sbjct 120 GGGGAAGAGTAGTAGAGATGTCT-TTGCGAAGGCTTCGATGGAAATGGCGGAATCGAATT 178
Query 236 CGATATCTTCCGTTGTTGTCAATT-C-CT---C----TGGTCCTATCATCGTGATTGATA 286
||||| ||||| |||||||||| | || | |||||||||||||||||||||||
Sbjct 179 CGATACCTTCC---GTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTGATTGATA 235
Query 287 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCATTTTG 346
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 236 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCATTTCG 295
Query 347 AAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCT-GAAAAGAAAAAAGCCAAGAGGA 405
|||||||||||||||||||||||||| | |||||||| |||| ||||||| ||||||||
Sbjct 296 AAGTTTACCGCAATGATGAACTTACAATAGAGGAGCTTGAAA-GAAAAAATCCAAGAGGG 354
Query 406 TTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTCTGGGATTTCCTTGCAAACTGTT 465
| || |||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 355 GTATTAATTTCTCCTGGACCTGGTACACCTCAAGACTCTGGGATTTCTTTGCAAACCGTT 414
Query 466 TTGGAACTCGGACCACTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGA 525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTGGAACTCGGACCATTTGTTCCTTTATTTGGAGTATGTATGGGTTTGCAGTGTATAGGA 474
Query 526 GAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCA 585
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 GAAGCATTTGGAGGAAAGATTGTGCGGGCACCATTTGGTGTTATGCATGGGAAAAGCTCA 534
Query 586 ATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACCCTTTC 645
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 535 ATGGTACACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGACTATCTAACCCTTTC 594
Query 646 CTTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATGAACTC 705
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 595 CTTGTAGGTAGATATCACAGCCTCGTTATCGAAAAAAATTCATTTCCTAGTGATGAACTC 654
Query 706 GAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACA-GAAAGTACAA 764
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 655 GAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACAAGAAA-TACAA 713
Query 765 GCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGACAAT 824
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 714 GCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAAACAAT 773
Query 825 TGTTCG-CAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAG 879
||| || ||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 774 TGT-CGGCAACTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGTTGACATAG 828
> Ahg484723 jgi|Araly1|484723|fgenesh2_kg.5__715__AT1G25220.1
Length=933
Score = 525 bits (284), Expect = 3e-148
Identities = 375/418 (90%), Gaps = 10/418 (2%)
Strand=Plus/Plus
Query 539 GAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCTCAATGGTTCACTATG 598
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 493 GAAAGATTGTGCGGTCACTATTTGGTGTTATGCATAGGAAAAGCTCAATGGTTCACTATG 552
Query 599 ATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACCCT-TTCCT-TG-TAGGTA 655
||||||||||| || || ||||||||||| |||||||||| | | | | | ||
Sbjct 553 ATGAGAAAGGAAAATAATGCTTGTTCTCTAGATTATCCAA--GTATAAATCAGATTTGTT 610
Query 656 GATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATGAACTCGAGGTTACAG 715
||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 611 TATATCACAGCCTCGTCATCGAAAAAGATTCATTCCCTAGTGGTGAACTCGAGGTTACAG 670
Query 716 CATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACA-GAAAGTACAAGCATATACAG 774
||||||||| ||||||||||||||||||| || |||||| | ||||| | |||||||||
Sbjct 671 CATGGACAGCAGATGGTCTGGTTATGGCTTCCTGTCACATG-AAGTATAGGCATATACAA 729
Query 775 GGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGACAATTGTTC-GCAA 833
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 730 GGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAGACAATTG-TCTGCAA 788
Query 834 TTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAGGCTTAGCCTGAATG 893
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||| |||
Sbjct 789 TTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGACATAGACT-AGTCTGGATG 847
Query 894 AGAAAATCAGCTGTGTTCGATTAGTGCTTCCCTGTAATAATGTCTGCCAATGCAAAAT 951
||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 848 AGAAAATCAGCTGTGTTTGATTAGTTCCTCCCTGTAATAATGTCTGCCAATGCAAAAT 905
Score = 359 bits (194), Expect = 3e-98
Identities = 342/407 (84%), Gaps = 35/407 (9%)
Strand=Plus/Plus
Query 164 GAGTTTCGGTTTTGTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATG 222
|||||||||||||| ||||||||||||||||||| | |||| |||| |||||||||||||
Sbjct 56 GAGTTTCGGTTTTGGGGAAGAGTCGTAGAGATGTCT-TTGCAAAAGATTCGATTGAAATG 114
Query 223 GCGGAATCGAATTCGATATCTTCCGTTGTTGTCAATT-C-CT---C----TGGTCCTATC 273
|||||||||||||||| | |||| ||| ||||||||| | || | |||| |||||
Sbjct 115 GCGGAATCGAATTCGACACCTTCTGTTTTTGTCAATTCCTCTAAGCAGAATGGTTCTATC 174
Query 274 ATCGTGATTGATAATTACGACAGCTTCACTTACAATCTCTGCC--A-----GT--A---- 320
||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 175 ATCGTGATTGATAATTACGACAGCTTCGCTTACAATCTCTGCCATATTTTTTTCAATTTT 234
Query 321 -TA---TG-GGAGAG-CTAGGGTGCC-ATTTTGAAGTTTACCGCAATGATGAACTTACAG 373
|| || | | | ||| |||| | |||||||||||||||||| ||||||||||||
Sbjct 235 TTATTTTGTTTCG-GTCAAGGATGCCGA-TTTGAAGTTTACCGCAATTATGAACTTACAG 292
Query 374 TTGAGGAGCTGAAAAGA-AAAAAGCCAAGAGGATTGTTGATTTCTCCTGGACCTGGTACC 432
| ||||||||||||| | ||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 293 TAGAGGAGCTGAAAA-ATAAAAATCCAAGAGTAATGTTGATTTCTCCTGGACCTGGTACC 351
Query 433 CCTCAAGACTCTGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACCACTTGTTCCTTTA 492
||||||||||||||||||| ||| ||||| |||||| |||| ||||| | |||| |||||
Sbjct 352 CCTCAAGACTCTGGGATTTTCTTTCAAACAGTTTTGAAACTTGGACCTCGTGTTTCTTTA 411
Query 493 TTTGGAGTATGTATGGGTTTGCAGTGTATAGGAGAAGCATTTGGAGG 539
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 TTTGGAGTATGTATGAATTTGCAGTGTATAGGAGAAGCATTTGGAGG 458
> Ahg484722 jgi|Araly1|484722|fgenesh2_kg.5__714__AT5G57890.1
Length=825
Score = 470 bits (254), Expect = 1e-131
Identities = 325/358 (91%), Gaps = 9/358 (3%)
Strand=Plus/Plus
Query 524 GAGAAGCATTTGGAGGAAAGATTGTGCGGTCACCATTTGGTGTTATGCATGGGAAAAGCT 583
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 475 GAGAAGCATTTAGAGGAAAGATTGTGCGGTCACTATTTGGTGTTATGCATGGGAAAAGCT 534
Query 584 CAATGGTTCACTATGATGAGAAAGGAGAAGAAGGCTTGTTCTCTGGATTATCCAACCCTT 643
|||||||||||||||||||||||||| || || |||| | | | | || | |||||
Sbjct 535 CAATGGTTCACTATGATGAGAAAGGAAAATAATGCTT-AT-T-T-GTTTGT-GTTCCCTT 589
Query 644 TCCTTGTAGGTAGATATCACAGTCTCGTGATCGAAAAAGATTCATTTCCTAGTGATGAAC 703
|| ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||| |||||
Sbjct 590 TCTTTGTAAGTAGATATCACAGCCTCGTCATCGAAAAAGATTCATTCCCTAGTGGTGAAC 649
Query 704 TCGAGGTTACAGCATGGACAGAAGATGGTCTGGTTATGGCTGCCCGTCACA-GAAAGTAC 762
||||||||||||||||||||| ||||||||||||||||||| || |||||| | |||||
Sbjct 650 TCGAGGTTACAGCATGGACAGCAGATGGTCTGGTTATGGCTTCCTGTCACATG-AAGTAT 708
Query 763 AAGCATATACAGGGAGTTCAATTTCATCCGGAGAGTATTATAACAACCGAAGGCAAGACA 822
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 709 AAGCATATACAAGGAGTTCAATTTCATCCGGAGAGTATTATAACAACTGAAGGCAAGACA 768
Query 823 ATTGTTC-GCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGGCATAG 879
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 ATTG-TCTGCAATTTCATCAAACTCGTAGAGAAAAAGGAATCTGAGAAGCTGACATAG 825
Score = 405 bits (219), Expect = 3e-112
Identities = 383/456 (84%), Gaps = 36/456 (8%)
Strand=Plus/Plus
Query 55 ACAATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTT-CAC 113
||||||| |||||||||| ||||||| | |||||||||||||| |||| ||| || |||
Sbjct 20 ACAATGGTGGCTACTACACTGTACAAGT-ATGTCTTCTTCAACCCAAGTCTGG-TTCCAC 77
Query 114 CACTCGCCGCCTAAACCAGTCTCTCGTTAACTCTCTTACGAACCCAACAAGAGTTTCGGT 173
||||| | ||||||||| |||||||||||| || ||||||| || ||||||||||||||
Sbjct 78 CACTCACTGCCTAAACCCTTCTCTCGTTAACCCTTTTACGAATCCGACAAGAGTTTCGGT 137
Query 174 TTTGTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCGA 232
|||| ||||||||||||||||||| | |||| |||| |||||||||||||||||||||||
Sbjct 138 TTTGGGGAAGAGTCGTAGAGATGTCT-TTGCAAAAGATTCGATTGAAATGGCGGAATCGA 196
Query 233 ATTCGATATCTTCCGTTGTTGTCAATTCCTCT--G--G--TC---CTATCATCGTGATTG 283
|||||| | |||||||| |||||||||||||| | | | |||||||||||||||
Sbjct 197 ATTCGACACCTTCCGTTTTTGTCAATTCCTCTAAGCAGAATGGTTCTATCATCGTGATTG 256
Query 284 ATAATTACGACAGCTTCACTTACAATCTCTGCCAG-T-------A-T-----ATGG-GA- 327
||||||||||||||||| |||||||||||||||| | | | || |
Sbjct 257 ATAATTACGACAGCTTCGCTTACAATCTCTGCCATATTTTTTTCAATTTTTTATTCTGTT 316
Query 328 --GAGCTAGGGTGCC-ATTTTGAAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTG 384
|||||||| |||| |||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 317 TCGAGCTAGGATGCCGATTT-GAAGTTTACCGCAATTATGAACTTACAGTAGAGGAGCTG 375
Query 385 AAAAGA-AAAAAGCCAAGAGGATTGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTC 443
|||| | ||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 376 AAAA-ATAAAAATCCAAGAGTAATGTTGATTTCTCCTGGACCTGGTACCCCTCAAGACTC 434
Query 444 TGGGATTTCCTTGCAAACTGTTTTGGAACTCGGACC 479
|||||||| ||| ||||| |||||| |||| |||||
Sbjct 435 TGGGATTTTCTTTCAAACAGTTTTGAAACTTGGACC 470
> Ahg887377 jgi|Araly1|887377|Al_scaffold_0358_2
Length=429
Score = 459 bits (248), Expect = 3e-128
Identities = 342/384 (89%), Gaps = 19/384 (5%)
Strand=Plus/Plus
Query 58 ATGGCGGCTACTACATTGTACAATTCCTGTCTTCTTCAACCGAAGTATGGCTTCACCACT 117
||||||||||||||| |||||| || |||||||||||||| |||| ||||| |||||||
Sbjct 1 ATGGCGGCTACTACACAGTACAAGTCTTGTCTTCTTCAACCTAAGTCTGGCTCCACCACT 60
Query 118 CGCCGCCTAAACCAGTCTCTCGTTAACT-CTCTTACGAACCCAACAAGAGTTTCGGTTTT 176
||||| ||||||| ||||||||||| | |||||||||| || || ||||||||||||
Sbjct 61 CGCCGACTAAACCCTTCTCTCGTTAA-TCCTCTTACGAATCCGAC---AGTTTCGGTTTT 116
Query 177 GTGGAAGAGTCGTAGAGATGT-TATTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATT 235
| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 117 GGGGAAGAGTCGTAGAGATGTGT-TTGCGAAAGCTTCGATGGAAATGGCGGAATCGAATT 175
Query 236 CGATATCTTCCGTTGTTGTCAATT-C-CT---C----TGGTCCTATCATCGTGATTGATA 286
||||| |||||||||||||||||| | || | ||||||||||||||| |||||||
Sbjct 176 CGATACCTTCCGTTGTTGTCAATTCCTCTAAGCAGAATGGTCCTATCATCGTCATTGATA 235
Query 287 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGGTGCCATTTTG 346
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 236 ATTACGACAGCTTCACTTACAATCTCTGCCAGTATATGGGAGAGCTAGGATGCCATTTCG 295
Query 347 AAGTTTACCGCAATGATGAACTTACAGTTGAGGAGCTGAAAAGAAAAAAGCCAAGAGGAT 406
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 296 AAGTTTACCGCAATGATGAACTTACAGTAGAGGAGCTGAAAA-AAAAT--CCAAGAGGGG 352
Query 407 TGTTGATTTCTCCTGGACCTGGTA 430
| ||||||||||||||||||||||
Sbjct 353 TATTGATTTCTCCTGGACCTGGTA 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5