BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57900.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495890 jgi|Araly1|495890|fgenesh2_kg.8__1706__AT5G57900.1 1454 0.0
> Ahg495890 jgi|Araly1|495890|fgenesh2_kg.8__1706__AT5G57900.1
Length=959
Score = 1454 bits (787), Expect = 0.0
Identities = 875/919 (95%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 4 AAAACAAGAATCTTTATGGAAGAAGACGGGTCTGATTGGGGCGGATTGGCTCCAGAGATA 63
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACTAGAATCTTCATGGAGGAAGACGGGTCTGATTGGGGCGGATTGGCTCCAGAGATA 60
Query 64 CTCATCAACATCATTTCAAGGCTTACGATTCAGGAGCTATGGACCGGTCCGATGTTCGTC 123
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCATCAACATCATCTCAAGGCTCACGATTCAGGAGCTATGGACGGGTCCGATGTTCGTC 120
Query 124 CAAAAATCGTGGCTAACTGTTTGCAGAGATCCGTATCTCTGGTCTATCTTCGATCTGGAG 183
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAAATCGTGGCTAACTGTTTGCAGAGATCCGTATCTCTGGTCTATCTTCGATCTGGAA 180
Query 184 CCATGGTTCGATTCCTATCCCGAGTCGACTCACTTGTGGTCCCCTGAGTTCGAGCAGAAG 243
||||||||||| || |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 181 CCATGGTTCGAGTCATATCCCGAGTCGACTCACTTGTGGTCCCCTGATTTCGAGGGGAAG 240
Query 244 GTAGACTTAATGCTACGATCAGTCGTTGATTGGAGCGAAGGTGGTCTCACTAAGATCCGC 303
||||||| |||||| ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 241 GTAGACTCAATGCTCCGATCAGTCGTTGATTGGAGCGATGGTGGTCTAACCGAGATCCGC 300
Query 304 GTCCGCCATTGCAGCGACCACGCTCTCTCTTACGCAGCCGATAGATGCCCGAATCTACAG 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTCCGCCATTGCAGCGACCACGCTCTCTCTTACGCAGCCGATAGATGCCCAAATCTACAG 360
Query 364 GTTCTTGCCATTAGAAGCAGTCCTAACGTGACAGACGCATCGATGACGAAGATAGCGTTT 423
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTTCTTGCCGTTAGAAGCAGTCCAAACGTGACAGACGCATCTATGACGAAGATAGCGTTT 420
Query 424 CGGTGCAGGAGTTTAAAGGAACTTGATATCAGTTACTGTCACGAGATATCTCACGACACT 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGGTGCAGGAGTCTAAAGGAACTTGATATCAGTTACTGTCACGAGATATCTCACGACACT 480
Query 484 CTTGTGATGATTGGTAGAAACTGTCCTAATCTGAGGATCTTGAAACGTAATCTTATGGAT 543
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 481 CTTGTGATGATTGGTAGAAACTGTCCTAATCTGAGGATCTTGCAACGTAACCTTATGGAC 540
Query 544 TGGTCTTCTCGGCACATTGGCTCTGTTCCTACAGAATACTTAGACGCTTGTCCTCAAGAC 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TGGTCTTCTCGGCACATTGGCTCTGTTCCTACAGAGTACTTAGACGCTTGTCCTCAAGAC 600
Query 604 GGAGACACAGAAGCTGACGCGATTGGGAAACATATGATCAATCTAGAGCATTTGGAGATT 663
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 601 GGAGACACAGAAGCTGATGCGGTTGGGAAACATATGATCAATCTAGAGCGTTTGGAGATT 660
Query 664 CAGTTCTCTAGATTATCTGTCAAGGGTCTTGCTTCGATATGTGAGGGTTGTCCCAAGCTA 723
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CAGTTCTCTAGATTATCTGTCAAGGGTCTTGCTTCTATATGTGAGGGTTGTCCCAAGCTA 720
Query 724 GAGTACTTGGACTTGTTTGGGTGTGTGCATTTGTCAAGCCGTGACATTACAAGCAACGTG 783
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GAGTACTTGGACTTGTTTGGCTGTGTGCATTTGTCAAGCCGTGACATTACAAGCAATGTT 780
Query 784 TCAAGGCTTAAATGGCTTAAGGAGGTAAAGAAGCCAGATGTGTATGTGCCAAGGTCAGGG 843
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 781 TCAAGGCTTAAATGGCTTAAGGAGGTGAAGAAGCCAGATGTTTATGTGCCAAGGTCAGGA 840
Query 844 GATGTGGCGCAGACGGAGAGGTATGGACATTGGAGACTCTATGACGAGAGATTTGACATA 903
|||||||| || || ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 841 GATGTGGCTCAAACAGAGAGGTATGGACATTGGAGACTCTATGATGAGAGATTTGATATA 900
Query 904 CAAGCCATGAGAATCTGAT 922
||||||||||| |||||||
Sbjct 901 CAAGCCATGAGGATCTGAT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5