BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57910.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332081 jgi|Araly1|332081|fgenesh1_pm.C_scaffold_8001424 894 0.0
> Ahg332081 jgi|Araly1|332081|fgenesh1_pm.C_scaffold_8001424
Length=627
Score = 894 bits (484), Expect = 0.0
Identities = 583/630 (93%), Gaps = 9/630 (1%)
Strand=Plus/Plus
Query 152 ATGAATCCAACTCACGGAGATTTCACTCCCTTGAACTCTAATCATTTCGAGGATCCAAAG 211
|||||||||| |||| |||||||| | |||||| | |||||| ||| |||||||| |||
Sbjct 1 ATGAATCCAAGTCACAAAGATTTCATTTCCTTGAGCCCTAATCCTTTTGAGGATCCGAAG 60
Query 212 GTCAGGTTTAGGCATCATAGCCTTATGCAAGACTATGGAGAATTGCATATGGAAACCGAA 271
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCAGGCTTAGGCATCTTAGCCTTATGCAAGACTATGGAGAATTGCATATGGAAACCGAA 120
Query 272 GCTATGAGAAAAAGGTTACAGGCAGTGCGAGAAAGAAAGGCAACACTAATGGCTGAAGTC 331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTATGAGAAAAAGGTTACAGGCAGTGCGAGAAAGAAAGGCAACACTAATGGCTGAAGTC 180
Query 332 AGATTTCTGCGACGGAGATACAGACATTTGAGACAAGACCAGCCACAAGAGATTAAAAAG 391
||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 181 AGATTTCTGCGTCGGAGATACAGACATTTGAGAGAAGACCAGCCACAAGACATTAAAAAG 240
Query 392 GTCAGA--A-GATCAAATGGTGGGAAGAAGATCCGAGTGGAAGTGTCTCCTAGTAACAAA 448
|| ||| | ||||||||||||||| |||||||||||||||||||||||||| ||| | |
Sbjct 241 GTTAGAGGAAGATCAAATGGTGGGAGGAAGATCCGAGTGGAAGTGTCTCCTAATAAGAGA 300
Query 449 AGTGAGGCGGAAACTAAGCATGTTTCGCTTCCTGACTTAAACCACTCGGAAAAGGCTCAC 508
|||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 301 AGTGAGACGGAAACTAAGCATGTTTCGCTTCCTGACTTAAACCATTCGGGAAAGGCTCAC 360
Query 509 GATGAAACCAAAACCAGTCCTAAGAGAAGAGTTCCTTTGTTTGATCTAAATCAGATATCT 568
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 361 GATGAAACCAAAACCAGTCCTAAGAGAAGAGTTCCATTGTTCGATCTAAACCAGATATCT 420
Query 569 GGAGAAGAAGAGCAAGAAACAGAGGCAGTGGACAATAAT---CAAGAGAACACGAGAGTT 625
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct 421 GGAGAAGAAGAGCAAGAAACAGAGGCAGTGGATAATAATAATCAAGAGAAGACGAGAGTT 480
Query 626 GAAGAAAGTAATTCATGTAAGAGATTAATGATCAGTAGCATTGAGATGCAGCAGAAAGAT 685
|||||||||| ||||||||||||| | ||| ||| |||||||||||||||||||||||
Sbjct 481 GAAGAAAGTAGTTCATGTAAGAGA--A-TGAGCAGCGGCATTGAGATGCAGCAGAAAGAT 537
Query 686 GTGAAGCCATCTTCTTGCAGGAATGGCGGAAACGGATCAAATAAGAGGAAAATTTCATGG 745
||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 538 GTGAAGCTATCTTCTTGCAGGAATGGCGGAAACGGGTCAAACAAGAGGAAAATTTCATGG 597
Query 746 CAAGATCCTGTCGCAGCTCTCAGAGTCTAA 775
||||||||||| |||||||||||||| |||
Sbjct 598 CAAGATCCTGTTGCAGCTCTCAGAGTGTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5