BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57920.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332082 jgi|Araly1|332082|fgenesh1_pm.C_scaffold_8001425 800 0.0
> Ahg332082 jgi|Araly1|332082|fgenesh1_pm.C_scaffold_8001425
Length=546
Score = 800 bits (433), Expect = 0.0
Identities = 515/553 (93%), Gaps = 11/553 (2%)
Strand=Plus/Plus
Query 36 ATGTCTTCAGTAATGATGTGTTGTTGTTTGCTTCTCTTGTTTGGTTTGTTGTCTGAAGGT 95
||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCACTAATGA--TG-TGTTGTTTGCTTCTCTTGTTTGGTTTGTTGTCTGAAGGT 57
Query 96 AGAGAGATTCTGGTGGGAGGCAAATCTAACACATGGAAGGCTCCAGAATCTAGAGATGAA 155
||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||
Sbjct 58 AGAGAGATTCTGGTGGGAGGCAAGTCTAACACATGGAAAGTTCCGGAATCTAGAGATGAA 117
Query 156 ACACTAAACCAATGGTCAG-GCAGAACAAGATTCAAAATTGGAGATTCTCTCTTGTGGAA 214
||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 118 ACACTAAACCAATGGTCAGAG-AGAACAAGATTCAAGATTGGAGATTCTCTCTTGTGGAA 176
Query 215 ATACAATGCGGAGAATGATTCAGTGTTGCAAGTGAGACAAACAGATTACGAGAGATGTGA 274
||||||||| ||||||||||||||| | ||||| || ||| ||||||||||||||||||
Sbjct 177 ATACAATGCAGAGAATGATTCAGTGCTACAAGTAAGGGAAAAAGATTACGAGAGATGTGA 236
Query 275 CAGATCAGAGCCAATAAGAGGATACAAAGATGGTCACACGAATATAGAGCTGAAGAGGTC 334
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAGATCAGAGCCTATAAGAGGATACAAAGATGGTCACACGAATATAGAGCTGAAGAGGTC 296
Query 335 AGGTCCTTTTTACTTCATAAGTGGAGAAGAAGGACATTGCCAAAGAGGAGAGAAGCTTCG 394
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 AGGTCCATTTTACTTCATAAGTGGAGAAGAAGGACATTGCCAAAGAGGTGAGAAGCTTCG 356
Query 395 TGTTGTTGTCTTGTCTCCAAATCACAACAGAAGCGTTGTTGATGCTCCTGCTCCTGTAAA 454
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 357 TGTCGTTGTCTTGTCTCCAAATCATAAGAGAAGCGTTGTTGATGCTCCTGCTCCTGTAAA 416
Query 455 CATTGTCTTGTCTCCAAATTACAACAGAAGCGTTGCTGCTGCTCCTTTAAACGCTCATAT 514
| | | |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 417 CGTCGACTTGTCTCCAAATTACAACAGAAGCGTTGCTGCTCCTCCTGTAAACGCTCATAT 476
Query 515 CATGAACAAGGGAAGCCTGAACACAG---CATGGAGTTTGCTTCTTCTTCTTCCATTAGG 571
|| ||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 477 CACAAACAAGGGAAGCCTGAACAGAGGAGCATGGAGTTTGCTTCTTCTTC--C-ATTAGG 533
Query 572 CCTTTTGGTTTAG 584
|||||||||||||
Sbjct 534 CCTTTTGGTTTAG 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5