BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57940.1
Length=2659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495894 jgi|Araly1|495894|fgenesh2_kg.8__1710__AT5G57940.2 3770 0.0
Ahg917508 jgi|Araly1|917508|Al_scaffold_0008_2259 213 5e-54
> Ahg495894 jgi|Araly1|495894|fgenesh2_kg.8__1710__AT5G57940.2
Length=2454
Score = 3770 bits (2041), Expect = 0.0
Identities = 2261/2367 (96%), Gaps = 15/2367 (1%)
Strand=Plus/Plus
Query 233 TTGCTTAATGATTAGAGTC--TTAAAGCTGTGCTCTTTCTTCATCGATTTGAGCAAGTGA 290
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 96 TTGCTTCATGATTAGAGTCTGTTAAAGCTGTGTTCTTTCTTCATCGATTTGAGCAATTGA 155
Query 291 TCTTGGAAGGCTCTTGAGTT-CTGAATTCCTTGTAAGCAATCATGGCAGGGAAAAGAGAA 349
|| ||||||||||||||||| || | | | | ||||||||||||||| ||| ||||
Sbjct 156 TCGTGGAAGGCTCTTGAGTTCCT-TA-T--TAG-CAGCAATCATGGCAGGCAAACGAGAC 210
Query 350 AACTTTGTGAGGGTGGATGATTTGGACTCTAGGTTACCATCATCATCTGTAGCCTTCCAA 409
|| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 211 AATTTTATGAGGGTGGATGATTTGGACTCTAGGTTACCATCATCATCTGTAACCTTCCAA 270
Query 410 CAGAACTACGCCTCCAATTTCAGTGGACAACTTCATCCTATTCATGCAAG-CAATGAAAC 468
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 271 CAGAACTACGCCTCCAATTTCAGTGGACAACTTCATCCTATTCATG-GAGCCAATGACAC 329
Query 469 TTCTAGATCCTTCAAGAAAGGTATCCAGAAGGGTTCCAAAGGGCTTAAGTCGATCGGACG 528
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| || ||
Sbjct 330 ATCTAGATCATTCAAGAAAGGGATCCAAAAGGGTTCCAAAGGGCTTAAATCGATAGGCCG 389
Query 529 TTCACTTGGTTTCGGTGTTTATCGAGCAGTGTTCCCAGAAGACCTTAAAGTATCTGAAAA 588
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 390 TTCACTCGGTTTCGGTGTTTATAGAGCAGTGTTCCCAGAAGACCTTAAAGTATCTGAAAA 449
Query 589 GAAGATATTTGATCCTCAGGATAAATTCCTTTTGTATTGCAATAAATTATTCGTTGCGTC 648
||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||
Sbjct 450 GAAGATATTTGATCCTCAGGACAAAATCCTTTTGTATTGCAATAAGTTATTCGTCGCCTC 509
Query 649 ATGTATTCTTTCAGTGTTTGTGGACCCTTTTTTCTTCTATCTTCCTGTGATTAATGCTGA 708
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 510 ATGTATTCTTTCAGTGTTTGTGGACCCTTTTTTTTTCTATCTTCCTGTGATTAATGCTGA 569
Query 709 GTCCAAGTGCCTGGGTATTGACAGAAAACTGGCTATCACAGCAAGTACATTGCGGACTTT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTCCAAGTGCCTGGGTATTGACAGAAAACTGGCTATCACAGCAAGTACATTGCGGACTTT 629
Query 769 TATCGATGTGTTTTATCTCGCTCACATGGCTCTCCAGCTTAGGACTGCTTATATTGCACC 828
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 630 TATCGATGTGTTTTATCTAGCTCACATGGCTCTCCAGCTCAGGACTGCTTATATTGCACC 689
Query 829 TTCATCACGGGTCTTTGGGCGAGGTGAACTCGTGATTGATCCTGCACAGATAGCAAAGAG 888
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 690 TTCATCACGGGTCTTTGGGCGAGGTGAACTCGTGATTGATCCTGCGCAGATAGCAAAGAG 749
Query 889 ATATCTACAACGTTGGTTTATTATTGACTTTCTCTCAGTACTTCCT-CTCCCTCAGATTG 947
|||| |||| ||||||||||| ||||| |||||||||||||||||| | |||||||||||
Sbjct 750 ATATTTACAGCGTTGGTTTATCATTGATTTTCTCTCAGTACTTCCTGC-CCCTCAGATTG 808
Query 948 TAGTTTGGAGGTTCTTGCAAAGTTCAAATGGGTCGGATGTATTGGCTACAAAGCAGGCCT 1007
|||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||
Sbjct 809 TAGTTTGGAGGTTCTTGCAAAGCTCAAACGGATCGGATGTATTGGATACAAAGCAGGCCT 868
Query 1008 TGCTTTTCATTGTTTTGGTCCAGTATATACCGCGATTCCTACGTGTCTTACCCTTGACGT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TGCTTTTCATTGTTTTGGTCCAGTATATACCGCGATTCCTACGTGTCTTACCCTTGACGT 928
Query 1068 CAGAATTGAAAAGGACAGCAGGTGTCTTTGCTGAAACGGCTTGGGCTGGTGCCGCTTATT 1127
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 929 CAGAATTGAAAAGGACAGCAGGTGTCTTTGCGGAAACTGCTTGGGCTGGTGCCGCTTATT 988
Query 1128 ATCTGCTTTTATATATGCTTGCAAGTCATATAGTTGGAGCTTTTTGGTACCTTTTAGCCT 1187
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ATCTGCTCTTATATATGCTTGCAAGTCATATAGTTGGAGCTTTTTGGTACCTTTTAGCCT 1048
Query 1188 TAGAACGTAACGACGCCTGCTGGCAGGAGGCCTGTATA-GATGCAGGGAATTGCAGCACA 1246
| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1049 TGGAACGTAACGACGCCTGCTGGCAGGAGGCCTGTA-ACCATGCAGGGAATTGCAGCACA 1107
Query 1247 GATTTCTTGTACTGTGGCAATCAAAACATGGACGGCTATGCTGTTTGGAACAGAGCCAAG 1306
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1108 GATTTCTTGTACTGTGGCAATCAAAACATGGACGGCTATGCTGTTTGGAACAGAACCAAG 1167
Query 1307 GAATCTGTTCTTAAGTCCAAGTGCCGAGCTGACCTCGATGATAATAATCCTCCATTTGAC 1366
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GAATCTGTTCTTCAGTCCAAGTGCCGAGCTGACCTCGATGATAATAATCCTCCATTTGAC 1227
Query 1367 TTTGGGATTTATACACAGGCTTTATCGTCTGGAATTGTCTCGTCCCAAAACTTCATCGTA 1426
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1228 TTTGGGATTTATACACAGGCTTTATCGTCTGGAATTGTCTCGTCTCAAAACTTCATCGTA 1287
Query 1427 AAATATTGTTATTGTTTGTGGTGGGGCCTTCAGAACTTGAGTACACTTGGACAAGGGCTT 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AAATATTGTTATTGTTTGTGGTGGGGCCTTCAGAACTTGAGTACACTTGGACAAGGGCTT 1347
Query 1487 GAAACCAGTACATACCCAATGGAGATTATATTTTCCATATCTCTCGCCATTTCTGGGTTG 1546
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1348 GAAACCAGTACATACCCAATGGAAATTATATTTTCCATAGCGCTCGCCATTTCTGGGTTG 1407
Query 1547 ATCCTCTTTGCTCTTCTCATTGGAAACATGCAGACATATCTCCAATCTCTTACCATCCGG 1606
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ATCCTCTTTGCTCTTCTCATCGGAAACATGCAGACATATCTCCAATCTCTTACCATCCGG 1467
Query 1607 CTTGAAGAAATGAGAGTAAAGAGGCGTGATTCAGAACAATGGATGCATCACAGAATGTTA 1666
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1468 CTCGAAGAAATGAGAGTAAAGAGGCGTGACTCAGAACAATGGATGCATCACAGAATGTTA 1527
Query 1667 CCACAAGATCTTAGGGAGCGTGTGAGGCGCTATGACCAGTATAAATGGTTGGAGACACGT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CCACAAGATCTTAGGGAGCGTGTGAGGCGCTATGACCAGTATAAATGGTTGGAGACACGT 1587
Query 1727 GGTGTAGATGAAGAGTATCTCGTTCAGAATCTTCCCAAGGATCTCCGGAGAGACATCAAG 1786
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1588 GGTGTAGATGAAGAGTATCTCGTTCAGAATCTCCCCAAGGATCTCCGGAGAGACATCAAG 1647
Query 1787 CGGCATCTCTGTCTGGCTTTAGTGCGAAGGGTTCCATTGTTTAAGAGCATGGACGACAAG 1846
|||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1648 CGGCATCTTTGTCTGGCTTTAGTGCGCAGGGTTCCATTGTTTGAGAGCATGGACGACAAG 1707
Query 1847 CTGCTGGATGCGATCTGTATGCGGCTGAAACCATGCTTGTTCACAGAGAGTACCTACTTA 1906
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1708 CTGCTGGATGCGATCTGTATGCGACTAAAACCATGCTTGTTCACAGAGAGTACCTACTTA 1767
Query 1907 GTGCGGGAAGGAGATCCTGTAGACGAGATGCTATTCATAATACGTGGTCGCCTCGAGAGT 1966
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GTACGGGAAGGAGACCCTGTAGACGAGATGCTATTCATAATACGTGGTCGCCTCGAGAGT 1827
Query 1967 GTGACAACAGATGGAGGCAGGAGCGGTTTCTTCAACCGCAGTCTCCTGAAAGAAGGAGAA 2026
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1828 GTGACAACAGATGGAGGCAGGAGCGGTTTCTTCAACCGCAGTCTCCTTAAAGAAGGAGAA 1887
Query 2027 TTCTGCGGGGAAGAGCTTCTGACATGGGCATTGGATCCAAAATCAGGTGTAAATCTCCCG 2086
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 TTCTGTGGGGAAGAGCTTCTGACATGGGCATTGGATCCAAAATCAGGTGTAAATCTCCCG 1947
Query 2087 TCTTCCACGAGGACCGTGAAAGCTCTGACAGAAGTAGAGGCGTTTGCGCTGACCTCAGAG 2146
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1948 TCTTCCACGAGAACCGTGAAAGCTCTGACAGAAGTAGAGGCGTTTGCGCTGACCTCCGAG 2007
Query 2147 GAGCTGAAGTTTGTAGCAAGCCAGTTCCGGCGCTTACATAGCAGGCAAGTGCAGCACACA 2206
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2008 GAGCTGAAGTTTGTTGCAAGCCAGTTTCGGCGCCTACATAGCAGGCAAGTGCAGCACACA 2067
Query 2207 TTCAGGTTTTACTCTCACCAATGGAGGACTTGGGCTGCTTGTTTCATCCAGGCTGCCTGG 2266
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2068 TTCAGATTTTACTCTCACCAGTGGAGGACTTGGGCAGCTTGTTTCATCCAGGCTGCCTGG 2127
Query 2267 CGTAGATACTGCAAGAGGAAGAAAATGGAAGAGGCAGAAGCCGAGGCCGCGGCTGTGTCC 2326
||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||
Sbjct 2128 CGTAGATACTGCAAGAGGAAGAAGATGGAAGAGGCCGAAGCCGAGGCCGTGGCTGTGCCC 2187
Query 2327 AGCTCAACCGCTGGACCTTCATACTCCATTGGGGCTGCATTTCTTGCCACTAAGTTTGCG 2386
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2188 AGCTCAACCGCTGGACCTTCATACTCCATCGGGGCTGCATTTCTTGCCACTAAGTTTGCG 2247
Query 2387 GCTAATGCGCTTCGCACCATTCACAGGAACCGGAACACAAAGATTAGGGATTTGGTGAAG 2446
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2248 GCTAATGCGCTTCGCACCATTCACAGGAACCGGGACACAAAGATTAGGGATTTGGTGAAG 2307
Query 2447 CTGCAGAAGCCTCCTGAGCCTGATTTCACTGCTGACTGATGATTGAGCAGCTTGTAGACA 2506
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 CTGCAGAAGCCTCCCGAGCCTGATTTCACTGCTGACTGATGATTGAGCAGCTTGTAGACA 2367
Query 2507 TTA-TTGTTTATAATTTATGGGAATCATTACGGTTGAGATAAACAAATATTGCTTGGCTT 2565
| ||||||||||||||| |||| ||||||| |||| ||||||||||||| | ||||||
Sbjct 2368 ATGCTTGTTTATAATTTATAGGAAGCATTACGATTGACATAAACAAATATTTCATGGCTT 2427
Query 2566 TAAAGCTGCTTGTGCTGTCTGTAAAAT 2592
|| |||| ||||| |||||||||||||
Sbjct 2428 TAGAGCTACTTGTACTGTCTGTAAAAT 2454
> Ahg917508 jgi|Araly1|917508|Al_scaffold_0008_2259
Length=234
Score = 213 bits (115), Expect = 5e-54
Identities = 143/156 (92%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 794 ATGGCTCTCCAGCTTAGGACTGCTTATATTGCACCTTCATCACGGGTCTTTGGGCGAGGT 853
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTCTCCAGCTCAGGACTGCTTATATTGCACCTTCATCACGAGTCTTTGGGCGAGGT 60
Query 854 GAACTCGTGATTGATCCTGCACAGATAG-CAAAGAGATATCTACAACGTTGGTTTATTAT 912
||||| |||||||||||||||||||| | ||||||||||| | |||||||||||||| ||
Sbjct 61 GAACTTGTGATTGATCCTGCACAGAT-GTCAAAGAGATATTTTCAACGTTGGTTTATCAT 119
Query 913 TGACTTTCTCTCAGTACTTCCT-CTCCCTCAGATTG 947
||| |||||||||||||||||| | || |||| |||
Sbjct 120 TGATTTTCTCTCAGTACTTCCTGCACC-TCAGGTTG 154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100291615085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5