BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57950.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358009 jgi|Araly1|358009|fgenesh1_pg.C_scaffold_8001796 1236 0.0
> Ahg358009 jgi|Araly1|358009|fgenesh1_pg.C_scaffold_8001796
Length=957
Score = 1236 bits (669), Expect = 0.0
Identities = 810/873 (93%), Gaps = 30/873 (3%)
Strand=Plus/Plus
Query 41 GAGAAGAGAAGAGAAGATGGTTGGCGCGAATCTGAAAGCGGAGACGATGGCTCTAATGGA 100
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 102 GAGAGGAGAAGAGAAGATGGTTGGCGCGAATCTGAAAGCGGAGACGATGACTCTAATGGA 161
Query 101 CAAGAGAACAGCCATGGAGACGGAGATGAACTCTATTGTCGAACGTCTCTGCAATCCCGG 160
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CAAGAGAGCAGCCATGGAGACGGAGATGAACTCTATTGTCGAACGTCTCTGCAATCCCGG 221
Query 161 TGGTCCTGGTCTCTCCGGCAATCTCATCGACTCGGAGGGATTTCCTCGGGAAGATATTGA 220
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 222 CGGTCCTGGTCTCTCCGGCAATCTTATCGACTCGGAGGGATTTCCTCGGGAAGATATTGA 281
Query 221 CATTCCCATGGTGAGAACTGAGCGCCGTCGTCTTGCTGAGTTAAGGAGTGAGCACGGGGA 280
|||||| |||||||| ||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 282 CATTCCGGTGGTGAGAGCTGAGCGGCGTCGTCTTGCTGAGTTAAGGAATGAGCATGGGGA 341
Query 281 GATAACGGAAAAGATAAATGTGAACATTCAAATTCTTCATTCAGTGAGGCCTACATCTAG 340
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 342 GATAACGGAAAAGATCAATGTGAACATTCAAATTCTTCATTCAGCGAGGCCTACATCTAG 401
Query 341 AGCTTCATCCAC--AA-A---A-G--AT--T-CAGGTCCAGAAGAAACAAGCTTGTCAGG 388
|||||||||||| || | | | || | |||||||||||||||| ||||||||| |
Sbjct 402 AGCTTCATCCACAAAAGATTCAGGAAATGATGCAGGTCCAGAAGAAACTAGCTTGTCA-G 460
Query 389 TGCTGCAGTAAATTCTTTATCTGCCTCCA-TGCAGACATCTGGCTTCAGTGTTACTTCCG 447
| |||||| ||||||||||||||||||| || ||||||||||| |||||||||| ||||
Sbjct 461 -G-TGCAGTGAATTCTTTATCTGCCTCCATTG-AGACATCTGGCCTCAGTGTTACCTCCG 517
Query 448 GTCCCATGGATGTGGATGTGGTTACTAGTATTCCCTTTGCAATGGTTGATGAGATAAACG 507
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 518 GTGCCATGGATGTGGATGTGGTTACTAGTATTCCCTTTGCCATGGTTGATGAGATAAACG 577
Query 508 AGTCATCTCCAGCAGCAGAGGGTGGATTACAGCTTGGAGATCAGGTTTTGAAATTTGGCA 567
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 578 AGTCATCTCCAGCAGCAGAGGATGGATTACAGCTTGGAGATCAGGTTGTGAAATTTGGCA 637
Query 568 ACGTGGAGGGTGGTGACAACCTGTTGCAAAGGCTTGCCGCTGAAGCTCAGTCTAACCAGG 627
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 638 TCGTGGATGGTGGTGACAACCTGTTGCAAAGGCTTGCCACTGAAGCTCAGTCTAACCAGG 697
Query 628 GACAAGCCGTTTCTGTTCAAGTTATGAGGCAAGGTGCAAAAGTCGTCTTATCTGTCACAC 687
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 698 GACAAGCAGTTTCTGTTCAAGTTATGAGGCAAGGTTCAAAAGTCGTCTTATCTGTCACAC 757
Query 688 CAAGGATATGGCAAGGCAGAGGTCTATTGGGGTGCCATTTCCGTTTGGTATGAGCAGCAG 747
||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 758 CAAGGATATGGCAAGGCAGAGGT-----G-----CCATTTCCGTTTGGTATGAGCAGCAG 807
Query 748 ATACTTCCTTGGATTATCATCTGGGGGTCTGGATATGGTGAAAGCTTCTGTGAAAGCTAG 807
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 808 ATGCTTCCTTGGATTATCATCTGGGGGTCTGGATATGGTGAAAGCTTCTGCGAAAGCTAG 867
Query 808 TCGGTGATGAAGTCTATTATTGCAAAGTAGAGAACAGTGTTTTTCAACTTTTGTATGGAG 867
| |||||||||||| ||| | |||||||||||||||| ||||||| |||||||||||||
Sbjct 868 TGGGTGATGAAGTCAATT-T-GCAAAGTAGAGAACAGA-TTTTTCATCTTTTGTATGGAG 924
Query 868 AACCCAACTAAACAAATAGCATTTGTTCTGTAG 900
|| ||||||||||||||||||||||||||||||
Sbjct 925 AAACCAACTAAACAAATAGCATTTGTTCTGTAG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5