BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57970.1 Length=1520 Score E Sequences producing significant alignments: (Bits) Value Ahg495900 jgi|Araly1|495900|fgenesh2_kg.8__1716__AT5G57970.2 2041 0.0 > Ahg495900 jgi|Araly1|495900|fgenesh2_kg.8__1716__AT5G57970.2 Length=1491 Score = 2041 bits (1105), Expect = 0.0 Identities = 1327/1428 (93%), Gaps = 40/1428 (3%) Strand=Plus/Plus Query 88 TAGAGCTTCAAAAAACTTCTAAAGGAATGAATGTTTCTTTGATTTCCAAGAGAGTTTTGG 147 ||||||||| ||||||||| | |||||||| | ||||| ||||||||||||||||||||| Sbjct 90 TAGAGCTTC-AAAAACTTCGAGAGGAATGAGTTTTTCTGTGATTTCCAAGAGAGTTTTGG 148 Query 148 TTCGTTGACTGAGTTTAGTTTTGGAGATCTAGCAACTGAAAGCTGGTTAAATACTTAAAT 207 ||||||||||||| |||||||| || | ||| | | | || | | ||| ||| Sbjct 149 TTCGTTGACTGAG-TTAGTTTT--AGTTTTAG--A--G--ATCTAG---CA-ACTGAAA- 194 Query 208 GGACGTAGCAGGCTACTGTTTGTGAATCCTCTCGATGGCGATGTTGTTTGTGTGGAAAAA 267 | | | ||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct 195 -G-C-T----GGCTACTGTTTGTGATTCCTCTCGATGGCGATGATGTTCGTGTGGAAAAA 247 Query 268 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTT-TTAAACGAGAGCCAAGAGTC 326 ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||| Sbjct 248 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTTATAAAAAGAGAGCCAAGGGTC 307 Query 327 AGAAATCAGGTCACAGGCTCGTGAAAGCTGCTTTGAGTCAAACCCATGTC-AGGTGCTCC 385 |||||||||||||||||||||||||||||| ||||||||||||||||| | | || |||| Sbjct 308 AGAAATCAGGTCACAGGCTCGTGAAAGCTG-TTTGAGTCAAACCCATGACTA-GTTCTCC 365 Query 386 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTCTGGGG--T-CTAC 442 |||||||||||||||||||||||||||||||||||||||||||||| ||||| | || | Sbjct 366 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTATGGGGACTGCTGC 425 Query 443 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGCGAAAGCT 502 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 426 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGAGAAAGCT 485 Query 503 TGAAAGATCCTCATCTGGGCGT-ACTGGATCAGATGAGAAAACATCTTATGCTACACCAA 561 ||||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 486 TGAAAGATCATCATCTGGGC-TCACTGGATCAGATGAGAAAACATCATATGCTACACCAA 544 Query 562 CAGAAAC--TGT-GTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 618 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 CAGAAACTTTGTCTTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 604 Query 619 GACGGCATGAGCAGAACCTGAATTCTAATCTGTCACTT-AATGCATCGTTTTCATCTGAT 677 ||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||| Sbjct 605 GACGGCATGAGCAGAACCTAAATTCTAATCTGTCA-TTGAATGCATCATTTTCATCTGAT 663 Query 678 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACTGGTCGCTTGATTAGGTCGTACAGT 737 ||||||||||||||||||||||||||||||||||| ||||| ||||| || || || ||| Sbjct 664 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACGGGTCGGTTGATAAGATCCTATAGT 723 Query 738 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 783 Query 798 TTGGATTCACCACCTAATGGTTCAGAGACTAAGAAGAGGTGTACTTGGGTGACACCAAAC 857 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 784 TTGGATTCACCACCTAGTGGTTCAGAGACTAAGAAGAGGTGTGCTTGGGTGACACCAAAC 843 Query 858 TCCGATCCATGTTATATAGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 917 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 844 TCCGATCCATGCTATATTGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 903 Query 918 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTACG 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 904 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTATG 963 Query 978 ATACTGAGCAAGAGACAGGCTTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1037 |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 964 ATACTGAGCAAGAGGCAGACCTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1023 Query 1038 GTGAAAATCAATGAGAAGAAGATAATTGGTCCAGGAAGCCCGGCAAGCACTTTATTGTCT 1097 ||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||| Sbjct 1024 GTGAAAATCAATGAGAAGAAGCTAATCGGTCCAGGAAGCCCCGCAAGCACTTTGTTGTCT 1083 Query 1098 GATCTTAAGCTAAGGGCAGTCATTGAGAATGCACGCCAGATACTTAAGGTGATAGAAGAA 1157 ||||||||||||||||| ||||| |||||||| || || ||||||||||||||||||||| Sbjct 1084 GATCTTAAGCTAAGGGCCGTCATAGAGAATGCGCGTCATATACTTAAGGTGATAGAAGAA 1143 Query 1158 TACGGATCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTGAGCAAG 1217 || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1144 TATGGGTCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTAAGCAAG 1203 Query 1218 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGTAAAGAT 1277 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1204 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGCAAAGAT 1263 Query 1278 CTAGTGAGAAGAGGGTTCCGCAGCGTCGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1337 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1264 CTAGTGAGAAGAGGGTTCCGCAGCGTAGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1323 Query 1338 GCAGGGATAACAAACGATCATCTTACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1397 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1324 GCAGGGATAACAAACGATCATCTCACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1383 Query 1398 CATGAAAGGTATGTCTGAAAAGAAGGACTTCCTAA-AACTTGTTAA-A-GTC-CTTTTAT 1453 || |||||||||||||||||||| ||||||||| |||||||||| | | | ||||||| Sbjct 1384 CAAGAAAGGTATGTCTGAAAAGAGGGACTTCCTTTTAACTTGTTAAGAAGCCTCTTTTAT 1443 Query 1454 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1501 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56906826030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5