BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57970.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495900 jgi|Araly1|495900|fgenesh2_kg.8__1716__AT5G57970.2 2041 0.0
> Ahg495900 jgi|Araly1|495900|fgenesh2_kg.8__1716__AT5G57970.2
Length=1491
Score = 2041 bits (1105), Expect = 0.0
Identities = 1327/1428 (93%), Gaps = 40/1428 (3%)
Strand=Plus/Plus
Query 88 TAGAGCTTCAAAAAACTTCTAAAGGAATGAATGTTTCTTTGATTTCCAAGAGAGTTTTGG 147
||||||||| ||||||||| | |||||||| | ||||| |||||||||||||||||||||
Sbjct 90 TAGAGCTTC-AAAAACTTCGAGAGGAATGAGTTTTTCTGTGATTTCCAAGAGAGTTTTGG 148
Query 148 TTCGTTGACTGAGTTTAGTTTTGGAGATCTAGCAACTGAAAGCTGGTTAAATACTTAAAT 207
||||||||||||| |||||||| || | ||| | | | || | | ||| |||
Sbjct 149 TTCGTTGACTGAG-TTAGTTTT--AGTTTTAG--A--G--ATCTAG---CA-ACTGAAA- 194
Query 208 GGACGTAGCAGGCTACTGTTTGTGAATCCTCTCGATGGCGATGTTGTTTGTGTGGAAAAA 267
| | | ||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 195 -G-C-T----GGCTACTGTTTGTGATTCCTCTCGATGGCGATGATGTTCGTGTGGAAAAA 247
Query 268 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTT-TTAAACGAGAGCCAAGAGTC 326
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||
Sbjct 248 GTATGGCCTGTTTCAGATGTTTCTCTGTTGATTCAAGTTATAAAAAGAGAGCCAAGGGTC 307
Query 327 AGAAATCAGGTCACAGGCTCGTGAAAGCTGCTTTGAGTCAAACCCATGTC-AGGTGCTCC 385
|||||||||||||||||||||||||||||| ||||||||||||||||| | | || ||||
Sbjct 308 AGAAATCAGGTCACAGGCTCGTGAAAGCTG-TTTGAGTCAAACCCATGACTA-GTTCTCC 365
Query 386 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTCTGGGG--T-CTAC 442
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
Sbjct 366 TAGAGTTCAGTCCATGAATGTGGCTGAAGCAGAGACCAGGTCAACTATGGGGACTGCTGC 425
Query 443 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGCGAAAGCT 502
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 426 TGCTAAAAAGGCTAGTCCTTTCATCACACACAAAGCTGTATCAAAGTCACTGAGAAAGCT 485
Query 503 TGAAAGATCCTCATCTGGGCGT-ACTGGATCAGATGAGAAAACATCTTATGCTACACCAA 561
||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 486 TGAAAGATCATCATCTGGGC-TCACTGGATCAGATGAGAAAACATCATATGCTACACCAA 544
Query 562 CAGAAAC--TGT-GTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 618
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CAGAAACTTTGTCTTCTTCTTCTTCTCAGAAGCATACTCTTAATGCGGCTTCTATACTAC 604
Query 619 GACGGCATGAGCAGAACCTGAATTCTAATCTGTCACTT-AATGCATCGTTTTCATCTGAT 677
||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||
Sbjct 605 GACGGCATGAGCAGAACCTAAATTCTAATCTGTCA-TTGAATGCATCATTTTCATCTGAT 663
Query 678 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACTGGTCGCTTGATTAGGTCGTACAGT 737
||||||||||||||||||||||||||||||||||| ||||| ||||| || || || |||
Sbjct 664 GCCTCCATGGACTCGTTCCACAGCCGAGCATCAACGGGTCGGTTGATAAGATCCTATAGT 723
Query 738 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTTGGAAGTAGAAGTAAGTCTTACCCTTCCAAGCCAAGAAGTGTTGTCTCTGAAGGTGCT 783
Query 798 TTGGATTCACCACCTAATGGTTCAGAGACTAAGAAGAGGTGTACTTGGGTGACACCAAAC 857
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 784 TTGGATTCACCACCTAGTGGTTCAGAGACTAAGAAGAGGTGTGCTTGGGTGACACCAAAC 843
Query 858 TCCGATCCATGTTATATAGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 917
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCCGATCCATGCTATATTGTTTTCCATGATGAAGAATGGGGTGTGCCAGTTCACGATGAC 903
Query 918 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTACG 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 904 AAGAGGTTGTTTGAACTCCTTGTGCTTTCGGGTGCTTTGGCCGAACACACATGGCCTATG 963
Query 978 ATACTGAGCAAGAGACAGGCTTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1037
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATACTGAGCAAGAGGCAGACCTTCAGGGAAGTTTTTGCTGATTTTGACCCCAATGCCATT 1023
Query 1038 GTGAAAATCAATGAGAAGAAGATAATTGGTCCAGGAAGCCCGGCAAGCACTTTATTGTCT 1097
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||
Sbjct 1024 GTGAAAATCAATGAGAAGAAGCTAATCGGTCCAGGAAGCCCCGCAAGCACTTTGTTGTCT 1083
Query 1098 GATCTTAAGCTAAGGGCAGTCATTGAGAATGCACGCCAGATACTTAAGGTGATAGAAGAA 1157
||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct 1084 GATCTTAAGCTAAGGGCCGTCATAGAGAATGCGCGTCATATACTTAAGGTGATAGAAGAA 1143
Query 1158 TACGGATCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTGAGCAAG 1217
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1144 TATGGGTCATTTGACAAGTATATATGGAGTTTTGTGAAGAATAAGGCGATTGTAAGCAAG 1203
Query 1218 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGTAAAGAT 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1204 TTCAGGTACCAGCGACAAGTACCTGCAAAAACTCCAAAAGCAGAAGTGATAAGCAAAGAT 1263
Query 1278 CTAGTGAGAAGAGGGTTCCGCAGCGTCGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1337
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1264 CTAGTGAGAAGAGGGTTCCGCAGCGTAGGACCAACGGTGGTTTACTCCTTCATGCAGGCA 1323
Query 1338 GCAGGGATAACAAACGATCATCTTACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1397
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1324 GCAGGGATAACAAACGATCATCTCACCAGTTGTTTCAGGTTCCACCATTGTATATTCGAA 1383
Query 1398 CATGAAAGGTATGTCTGAAAAGAAGGACTTCCTAA-AACTTGTTAA-A-GTC-CTTTTAT 1453
|| |||||||||||||||||||| ||||||||| |||||||||| | | | |||||||
Sbjct 1384 CAAGAAAGGTATGTCTGAAAAGAGGGACTTCCTTTTAACTTGTTAAGAAGCCTCTTTTAT 1443
Query 1454 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1501
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GTTTTGTAAAGCCTCCAATTTGAGTCTATTATTAGTATTCAAAACAAT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5