BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57980.1
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495901 jgi|Araly1|495901|fgenesh2_kg.8__1717__AT5G57980.1 917 0.0
> Ahg495901 jgi|Araly1|495901|fgenesh2_kg.8__1717__AT5G57980.1
Length=642
Score = 917 bits (496), Expect = 0.0
Identities = 596/643 (93%), Gaps = 11/643 (2%)
Strand=Plus/Plus
Query 1 ATGTCGGACATGGATGATGAAATCACGAGGATTTTCAAGGTGCGTCGCACGGTGCTTCAG 60
||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGACTTGGATGATGAAATCACGAGGCTTTTCAAGGTGCGTCGCACGGTGCTTCAG 60
Query 61 ATGCTGAGGGATCGAGGTTACACTATAGAAGAATCGGACTTGAACTTGAAAAGAGAAGAG 120
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 61 ATGCTGAGGGATCGAGGTTATACTATAGAAGAATCTGATTTGAACTTGAAAAGAGAAGAG 120
Query 121 TTTGTTCAGAGGTTTTGT--A---A--AAC--TATGAACAAAGTGAACAAGGAAGCTCTT 171
||||||||||| |||||| | | ||| |||||||||||||||||| |||||||||
Sbjct 121 TTTGTTCAGAGATTTTGTAAACCTATGAACAATATGAACAAAGTGAACAAAGAAGCTCTT 180
Query 172 TTCGTCTCAGCCAATAAGGGGCCAAATCCAGCCGACAAGATTTACGTGTTCTACCCGGAA 231
|||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 TTCGTCGCTGCCAATAAGGGGCCAAATCCAGCCGACAAGATTTATGTATTCTACCCGGAA 240
Query 232 GGGCCTAAGGTGGGAGTCCCAGTGATTAAGAAGGAAGTGGCAATAAAGATGCGAGACGAT 291
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCCCTAAGGTGGGAGTCCCAGTGATTAAGAAGGAAGTGGCAATAAAGATGCGAGACGAT 300
Query 292 AAAGTTCATCGAGGGATCGTAGTTGTTCCAATGGCCATAACTGCTCCCGCTAGAATGGCC 351
||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||
Sbjct 301 AAAGTTCCTCGAGGGATCGTAGTTGTTCCAATGCCCATAACTGGTCCAGCTAGAATGGCC 360
Query 352 GTATCAGAACTCAACAAGATGCTAACGATTGAAGTCTTTGAGGAAGCTGAATTGGTGACC 411
||||||| || |||||||| ||||| |||||||||||||||||||| ||| ||||||||
Sbjct 361 ATATCAGAGCTTAACAAGATTCTAACTATTGAAGTCTTTGAGGAAGCCGAACTGGTGACC 420
Query 412 AACATCACTGAGCATAAACTCGTCAACAAGTACTATGTTCTCGACGATCAAGCAAAGAAG 471
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 421 AACATCACTGAGCATAAACTCATCAACAAGTACTATGTACTCGACGATCAAGCCAAGAAG 480
Query 472 AAATTACTCAACACGTACACGGTGCAAGACACACAGTTGCCTCGCATCCTTGTCACTGAT 531
|||||||||| || ||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 481 GAATTACTCAAAACATACACAGTTCAAGACACACAGTTGCCTCGCATCCTTGTCTCTGAT 540
Query 532 CCTCTTGCCAGATACTATGGACTCAAGCGAGGACAAGTTGTCAAGATCAGACGAAGCGAT 591
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 CCTCTTGCCAGATACTATGGACTCAAGCGAGGACAAATTGTCAAGATCAGACGAAGCGAC 600
Query 592 GCTACTTCAT-TGGACTATTATACCTACCGATTTGCTGTTTGA 633
| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 601 GTTACTTC-TCTGGACTATTATACCTACCGATTTGCTGTTTGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23178733536
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5