BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57990.1
Length=2891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495902 jgi|Araly1|495902|fgenesh2_kg.8__1718__AT5G57990.1 3960 0.0
> Ahg495902 jgi|Araly1|495902|fgenesh2_kg.8__1718__AT5G57990.1
Length=2837
Score = 3960 bits (2144), Expect = 0.0
Identities = 2635/2865 (92%), Gaps = 61/2865 (2%)
Strand=Plus/Plus
Query 37 TTCTTCTTCATTCACACAATCTCTCTTCCCGACAATCACACGGATTGTTGATTCCTCTGG 96
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCATTTACACAATTTCTGTTCCCGACAATCACACGGATTGTTGATTCCTCTGG 60
Query 97 ATTTGGGGTGAATGGAGGTTGCTACGAGCAGCACCGAAATCACGATCCAAACGGATCGGG 156
|||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 61 ATTT--GGTGAATGGAGGTTGCTACAAGCAGCACCGAATTCAGGATCCAAACGGATCGGG 118
Query 157 ATCCGTCGTCGAACAACAACGGATCTTGCGCTGTTGCTTCCTCTACCGCTTCCGCCGTCT 216
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 119 ATCCGTCGTCGAACAATAACGGATCTTGCGCTGTTGCTTCGTCTACCGCTTCCGCCGTGT 178
Query 217 TCAGAAAGATCGAGTTTCACCCTGCAAGGAAACCCTTCAACGGTTTCTCTAATGGGCGTT 276
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 TCAGAAAGATCGAATTTCACCCTGCAAGGAAACCCTTCAATGGTTTCTCTAATGGGCGTT 238
Query 277 CCGATTTTAAGATCGAGACTTTGAATCCTTGCTCCTCTAACCAGCGACTGTTATCTGCAC 336
|||||||||||||||||||||||||||| |||||| |||| | ||| | |||||||| |
Sbjct 239 CCGATTTTAAGATCGAGACTTTGAATCCCTGCTCCGGTAACAATCGAGTCTTATCTGCTC 298
Query 337 CGTCCGCTAAGAAACCCGACAGCTCCGATTTGTTGGAACATGGGTTCGAACCCGATCTTA 396
|||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||
Sbjct 299 CGTCCGTTAAGAAACCCGACGGCTCCGATTTGAAGGAACATGGGTTCGATCCCGAGCTTA 358
Query 397 CTTTTAGCATTACCTTCCGCAAAATCGGTGCGGGTTTGCAGAATCTCGGGAATACATGTT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTTAGCATTACCTTCCGCAAAATCGGTGCGGGTTTGCAGAATCTCGGGAATACATGTT 418
Query 457 TTCTTAATTCCGTATTGCAATGTTTGACATACACTGAGCCTTTAGCTGCTACTCTGCAAA 516
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 TTCTTAACTCAGTATTGCAATGTTTGACATACACTGAGCCTTTAGCTGCTACTCTTCAAA 478
Query 517 CCGCTGCGCATCAGAAATATTGTCATGTTGCTGGATTTTGTGCTTTATGTGCGATCCAGA 576
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 CCGCTGCACATCAGAAATATTGTCATGTTGCTGGATTCTGTGCTTTATGTGCGATCCAGA 538
Query 577 AACATGTCAGGACTGCCCGTCAAGCTAATGGCAGAATATTAGCACCAAAAGATTTGGTCT 636
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 539 AACATGTCAGGACTGCCCGTCAAGCTACTGGCAGAATATTAGCACCAAAGGATTTGGTCT 598
Query 637 CAAACTTGCGATGCATATCCCGAAACTTCAGAAATTGCCGGCAGGAGGATGCACATGAGT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAAACTTGCGATGCATATCCCGAAACTTCAGAAATTGCCGGCAGGAGGATGCACATGAGT 658
Query 697 ACATGATCAATTTGCTTGAATGCATGCACAAGTGTAGTCTACCTTCTGGTGTACCAAGTG 756
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 659 ACATGATCAATTTGCTTGAATGCATGCACAAGTGTAGTCTGCCCTCTGGTGTACCAAGTG 718
Query 757 AATCCTCTGATGCTTACAGGAGAAGTTTGGTACACAAGATTTTTGGCGGTAGCCTTCGAA 816
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 719 AATCCTCTGATGCTTACAGGAGAAGTTTGGTACACAAAATTTTTGGTGGTAGCCTTAGAA 778
Query 817 GTCAGGTGAAATGCGAGCAATGTTCCCATTGCTCCAACAAGTTTGATCCGTTTCTTGACC 876
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 779 GTCAGGTGAAATGCGAGCAATGTTCCCATTGCTCCAACAAGTTTGATCCATTTCTCGACC 838
Query 877 TAAGTCTAGATATTTCAAAGGCAGATTCATTGCAGAGAGCACTTTCGCGTTTCACTGCTG 936
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TAAGTCTAGACATTTCGAAGGCAGATTCATTGCAGAGAGCACTTTCACGTTTCACTGCTG 898
Query 937 TTGAGCTCTTAGATAATGGTGCAAAGGTTTACCAATGTGAAAGATGCAAGCAGAAAGTTA 996
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 899 TTGAGCTCTTAGATGATGGTTCAAAGGTTTACCAATGTGAAAGATGCAAGCAGAAAGTGA 958
Query 997 AGGCTAAAAAACAGCTAACTGTTTCTAAAGCACCTTACGTTCTAACCGTACATCTGAAGC 1056
|||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||
Sbjct 959 AGGCTAGAAAACAGCTAACTGTTTCTAAAGCACCTTATGTTCTTACCATACATCTTAAGC 1018
Query 1057 GGTTTGAAGCACACAGATCCGAAAAAATCGATAGGAAAGTAGATTTTACCTCTGCAATTG 1116
||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 1019 GGTTTGAAGCACACAGATCCGAAAAAATCGACAGGAAAGTCGAGTTTGCCTCTGCAATTG 1078
Query 1117 ACATGAAACCTTTCGTCAGTGGTCCTCATGAAGGTAATTTGAAGTATACTCTATATGGCG 1176
||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1079 ACATGAAACCTTTTGTCAGTGGTCCCCATGAAGGTAATTTGAAGTACACTCTATATGGTG 1138
Query 1177 TGTTAGTTCATTATGGTCGAAGCAGCCATTCTGGTCACTACGCCTGCTTTGTTCGCACAT 1236
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1139 TGTTAGTTCATTATGGTCGAAGCAGCCATTCTGGTCACTATGCATGCTTTGTTCGCACAT 1198
Query 1237 CAAGTGGCATGTGGTATTCCCTTGATGACAACAGGGTTGTCCAAGTTAGTGAGAAGACTG 1296
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1199 CAAGTGGCATGTGGTATTCCCTTGACGACAATAGGGTTCTCCAAGTTAGTGAGAAGACTG 1258
Query 1297 TGTTCAATCAAAAGGCATATATGCTATTCTATGTCCGTGATAGACAAAATGCTGTCCCTA 1356
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1259 TCTTCAATCAGAAGGCATATATGCTATTCTATGTCCGTGATAGACAAAATGCGGTCCCTA 1318
Query 1357 AGAATTCAGTCCCTGTGGTTAAGAAAGAGA----G--------CTTTGCCACAAACAGAG 1404
|||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1319 AGAATTTAGTCCCTGTGGTTAAGAAAGAGACTTCGAAAGAAAGCTTTGCCACAAACAGAG 1378
Query 1405 CTTCTTTGATCGTAGCTTCTAACATAAAAGATCAAGTGAATGGCTCAACAGTCATCAAAG 1464
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 CTTCTTTGATCGTATCTTCTAACATAAAAGATCAAGTGAATGGCTCAACAGTCACCAAAG 1438
Query 1465 AATGTGGGTTTGGCGCTCTTGTTGCCAATGGTTTAGCACCTTTGAAATCATGTGGCCCAA 1524
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 AATGTGGGTTTGACGCTCTTGTTGCCAATGGTTTAGCACCTTTGAAATCATGTGATCCAA 1498
Query 1525 GTACTCCTGCTGTCTTAACTCAGAAAGATTTAAATGCCAAAGAGACTCAGAACAATGC-C 1583
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1499 GTGCTCCTGCTGTCTTAACTCAGAAAGATTTAAATACCAAAGAGACTCAGAACAAT-CTC 1557
Query 1584 ATAAGTAATGTGGAGGCAAAAGAGATCCTTGAGACGGAAAATGGTTCGGCACCCGTGAAA 1643
||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||| |||
Sbjct 1558 ATAAGTAGTGTGGAGGCAAAAGAGATCCTTAAGATGGAAAATGGTTCAGCACCCGTAAAA 1617
Query 1644 ACTTGTGATTTAGCTGCCCCTACTGTCTTGGTTCAGAAAGACCTAAATACAAAAGAGATC 1703
||||||||| ||||||| ||||||||||| |||||||||||| ||||||| ||||||| |
Sbjct 1618 ACTTGTGATCTAGCTGCTCCTACTGTCTTAGTTCAGAAAGACTTAAATACCAAAGAGACC 1677
Query 1704 TTCCAAAAGGAAGTGCCACTTCCGCAGGCTAATGGGGAAGGATCTTTGGTAAAGGAGGAT 1763
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1678 TTGCAAAAGGAAGTGCCACTTCCGCAGGCTAATGGGGAAGAATATTTGGTAAAGGAGGAT 1737
Query 1764 TCAAAGGCTGCATGCCTAATATTACCAGAGAAGGTGTCTCCTCACCTGGATGGAAGCGCA 1823
||||||||||||||||||| |||||||| ||||||||| || | | ||||||||||| ||
Sbjct 1738 TCAAAGGCTGCATGCCTAACATTACCAGGGAAGGTGTCACCGCTCTTGGATGGAAGCACA 1797
Query 1824 AATGCTCAGACT-CTTGTGAAGTTGCCTACC-CTTGGACCTAAAGCTGAAAATAGTGTTG 1881
|||||||||| | ||| |||| |||||| || || ||| |||||||||||||||||||||
Sbjct 1798 AATGCTCAGA-TACTTTTGAAATTGCCTGCCTCT-GGAGCTAAAGCTGAAAATAGTGTTG 1855
Query 1882 AAGAGAAGAATTCTCTTAACAATTTGAATGAGCCTGCTAATTCACTGAAGGTTATAAATG 1941
||| |||| ||||| ||||||||||||| ||||||||||||||||||||||| | ||| |
Sbjct 1856 AAGGGAAGGATTCTGTTAACAATTTGAACGAGCCTGCTAATTCACTGAAGGTGAAAAACG 1915
Query 1942 TGTCAGTTGGTAATCCACCTGTTGAAAAAGCTGTTCTTATTGATCAAACTATGGGACATC 2001
||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1916 TGTCAATTGGTAATTCACCTATTGAAGAAGCTGTTCTTATTAATCAAACTATGGGACATC 1975
Query 2002 ACTTGGAAGAATCGGCCACTTCAATTGAGTCATTGAAGTTAACTTCCGAGAGGGAGACTC 2061
|| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 1976 ACCCGGAAGAATCGGCCACTTCAATTGAGCCGTTGAAGTCAACTTCCGAGAGGGAGACTC 2035
Query 2062 TCACCACACCGAA-AAAGACTCGCAAGCCTAAAACGAAAACTCTGAAGGTGGAATTCAAG 2120
|||||||||| || |||||||||||||| ||||| |||||||||||||||||| || |||
Sbjct 2036 TCACCACACC-AAGAAAGACTCGCAAGCGTAAAATGAAAACTCTGAAGGTGGAGTTTAAG 2094
Query 2121 TTTTTCAAGCTGGCCCTGGGCTTACGAAAAAAGAAGGTACAGAGAAGGGAGAGATTAAGT 2180
||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2095 TTTTTTAAGTTGGCCCTGGGCTTACGAAAAAAGAAGGTACAGAAAAGGGAAAGATTAAGT 2154
Query 2181 ACG-ACGGTAGCTGGCGAGATTATCTCTGAGGAGCTCCTATCAAAGAAGAGAGT-TAAAT 2238
| | || |||||| | ||||||||||||||||||||||||| ||||| || | || |
Sbjct 2155 A-GTACCCTAGCTGTCAAGATTATCTCTGAGGAGCTCCTATCCAAGAAAAGC-TCTACAG 2212
Query 2239 ATCAAGATACAAGTCTCA-TTGCCCCA-AGTAA--AATGATA-TCGAGT-AGTGATGGTG 2292
||||||| || || || || | | | | ||| || || | | || | | ||||||
Sbjct 2213 ATCAAGAG-CAT-TC-CACTT-CAC-AGA-TAACTAACGAAAGT-GA-TCAAA-ATGGTG 2263
Query 2293 CCGTTACGTCAGACCAACAGCAACCCGTGGGTAGTTCTGACTTGTCTGAGGCAAGCCAAA 2352
||| | ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 2264 CCGCTGCGTCAGACCAACAGCAACCCGCGGGAAGTTCTGACTTGTCTGAAGCAAGCCAAA 2323
Query 2353 ACGCCAAAAGAAAGAGAGAGTC---AGTTTTGTTACAGAAAGAAGCTGTGAACATTCTCA 2409
||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 2324 TCGCCAAAAGAAAGAGAGAGTCCTCAATTTTGTTACAGAAAGAAGCTGTGAATATTCTCA 2383
Query 2410 CTCGGGGTGTGCCAGAGACAGTGGTTGCCAAATGGGATGAGGAAATTTCAGCTTCT-CAG 2468
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
Sbjct 2384 CTCGGGGTGTGCCAGAGACAGTGGTTGCCAAATGGGATGAGGAATTTTCAACTTCTGC-G 2442
Query 2469 AAGAGGGGATCAAAGAGTGAAGGCGCAAGCAGCATTGGTTATGTAGCGGATGAGTGGGAT 2528
|||| |||||||||||||| |||| | |||||||| ||||||||||| ||||||||||||
Sbjct 2443 AAGATGGGATCAAAGAGTGTAGGCACGAGCAGCATCGGTTATGTAGCAGATGAGTGGGAT 2502
Query 2529 GAAGAATATGACCGAGGGAAGAAA-AAGAAGATAAGGATTAAAGAGGAGAGCTATAGAGG 2587
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 2503 GAAGAATATGACAGAGGGAA-AAAGAAGAAGATAAGGATTAAAGAGGAGAGCTATGGAGG 2561
Query 2588 GCCTAACCCGTTCCAGATGCTTGCATCGAAGAGACAAAAAGAGACAAAGAAGAAATGGAC 2647
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2562 GCCGAACCCGTTCCAGATGCTTGCATCGAAGAGACAAACAGAGACAAAGAAGAAATGGAC 2621
Query 2648 ACAAAGCATAACTGAC-GCAAAGACAGCCTACAGGATATGAATAAGGACTATAATCTTAT 2706
|||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 2622 ACAACGCATAACT-ACTGCAAAGACAGCCTACAGGATATGAAAAAGGACCATAATCT-AT 2679
Query 2707 ACATATATGTAATCCACATGCTGCTGTATCTGGCGTAAAGTAATGTTAACA-AATGAGGA 2765
| |||||||| ||||||||| | |||||| ||||||||||||||||||||| || |||||
Sbjct 2680 AGATATATGTCATCCACATGTTACTGTATTTGGCGTAAAGTAATGTTAACAGAA-GAGGA 2738
Query 2766 AAAGATAGGCTATAGACAGTAGTAGACATTGTTCGTT-ATCTCTTTTCCTCTCAGTTTTG 2824
|||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 2739 AAAGATAGGCTATAGACA-T--TAGACATTGTTCGTTTATCTCTTTTCCTCTCAGTTTTG 2795
Query 2825 TTCTC-TTTGGGATAAACAGAGAAAGACCCTATCCCCTGTTTTTT 2868
||| | |||| |||||||||||| ||||||||||||||||||||
Sbjct 2796 TTC-CGTTTGTGATAAACAGAGA--GACCCTATCCCCTGTTTTTT 2837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109128551925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5