BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58003.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332090 jgi|Araly1|332090|fgenesh1_pm.C_scaffold_8001433 1332 0.0
> Ahg332090 jgi|Araly1|332090|fgenesh1_pm.C_scaffold_8001433
Length=3021
Score = 1332 bits (721), Expect = 0.0
Identities = 972/1083 (90%), Gaps = 57/1083 (5%)
Strand=Plus/Plus
Query 1 ACTTCTT-CACTTTTACGGTTGCTCACCGTCGTGACATCTCCACTCTTTTCCTTTCAAAA 59
|||| || |||||| |||||||| |||||||| | ||||||||||| |||||| ||||||
Sbjct 1576 ACTT-TTCCACTTTCACGGTTGCACACCGTCGCGGCATCTCCACTC-TTTCCTCTCAAAA 1633
Query 60 TC-CAAAATCACGA-TTTGATTTTCTCTCGCCTCCGACGAACAAGTTTAAGATGAGCGTA 117
| ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 1634 -CTCAAAATCACGATTTTGAGGTTCTCTCGCCTCAGGCGAACAAGTTTAAGATGAGCGTA 1692
Query 118 GCAAGTGATTCTCCAGTTCATTCATCAAGTAGTAGTGACGATCTTGCTGCATTCCTTGAT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 GCAAGTGATTCTCCAGTTCATTCATCAAGTAGTAGTGACGATCTTGCTGCATTCCTTGAT 1752
Query 178 GCTGAATTAGACTCTGCATCAGATGCTTCGTCTGGACCCAGC---GAAGAAGAAGAAGCT 234
|||||| | |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 1753 GCTGAACTGGACTCTGCCTCAGATGCTTCTTCTGGACCCAGCGAAGAAGAAGAAGAAGCC 1812
Query 235 GAGGATGATGTAGAATCTGGGTTAAAGAGAC--AA---A-AG---TT-G-----G-AG-C 277
|||||||||| |||||||||||||||||||| || | || || | | || |
Sbjct 1813 GAGGATGATGAAGAATCTGGGTTAAAGAGACGAAAGTTAGAGCATTTAGAAACTGTAGAC 1872
Query 278 -------A-TTTAGAGGAAGCATCCTCAAGCAAAGGCGAATGCGAGCATCCAGGATCATT 329
| || ||||||||||||||||| ||||| |||||| |||| |||||||||||
Sbjct 1873 GAAGAGGAGATT-GAGGAAGCATCCTCAAGTAAAGGTGAATGCCAGCACCCAGGATCATT 1931
Query 330 TGGGAATATGTGCTTT-GTATGTGGACAAAAACTGGAAGAAACTGGTGTTTCATTTAGAT 388
|||||||||||| ||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct 1932 TGGGAATATGTG-TTTCGTCTGTGGACAAAAGTTGGAAGAAACCGGTGTTTCATTTAGAT 1990
Query 389 ACATACACAAGGAAATGAGGCTCAATGAAGATGAAATCTCCCGGTTGCGTGATTCAGATT 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 ACATACACAAGGAAATGAGGCTCAATGAAGATGAAATCTCCCGGTTGCGTGATTCAGATT 2050
Query 449 CGAGATTCTTGCAACGCCAGCGGAAGTTGTATTTAGTTCTCGATCTAGACCACACACTGC 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2051 CGAGATTCTTGCAACGCCAGCGGAAGTTGTATTTAGTTCTCGATCTAGACCACACGCTGC 2110
Query 509 TAAATACAACCATACTGAGGGACCTAAAACCAGAGGAGGAATACTTGAAAAGTCATACTC 568
| ||| ||||| |||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 2111 TTAATTCAACCGTACTAAGGGACCTGAAACCAGAGGAGGAATACTTGAAAAGCCATACAC 2170
Query 569 ATTCTCTTCAAG-A-----TG-------G-T--T-GCA-ATGTTTCCGGAGGCAGTCTTT 610
|||||||||||| | || | | | || |||||||||||||||||||||
Sbjct 2171 ATTCTCTTCAAGAACCTTTTGATTTTTTGTTAATCTCAGATGTTTCCGGAGGCAGTCTTT 2230
Query 611 TCCTACTGGAATTTATGCAAATGATGACCAAACTGAGGCCGTTTGTTCACTCATTTCTAA 670
|| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2231 TCATGCTGGAATTTATGCACATGATGACCAAACTGAGGCCATTTGTTCACTCATTTCTAA 2290
Query 671 AAGAAGCTAGTGAGATGTTTGTGATGTACATATACACAATGGGAGATA-GGAATTATGCA 729
||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 2291 AAGAAGCCAGTGAGATGTTTGTGATGTACATATACACAATGGGAGATAGGGCA-TATGCG 2349
Query 730 CGACAGATGGCCAAGCTGCTGGACCCCAAAGGAGAGTACTTTGGTGATCGGGTCATTTCT 789
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2350 CGACAGATGGCGAAGCTACTGGACCCCAAAGGAGAGTACTTTGGTGATCGGATCATTTCT 2409
Query 790 CGGGATGACGGCACAGTGAGACATGAAAAGAGTCTAGATGTGGTGCTTGGACAAGAAAGT 849
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2410 CGGGATGACGGCACAGTGAGACATCAAAAGAGTCTAGATGTGGTGCTCGGACAAGAAAGT 2469
Query 850 GCTGTTCTGATTCTTGACGATACAGAGAATGCGTGGCCAAAGCACAAGGACAATTTGATT 909
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2470 GCTGTTCTGATTCTTGACGATACAGAGAATGCGTGGCCAAATCACAAGGACAATTTGATT 2529
Query 910 GTGATAGAGAGATATCACtttttttCTTCGAGCTGCAGGCAGTTTGATCACAGATACAAG 969
||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 2530 GTGATAGAGAGGTATCACTTTTTCGCTTCGAGCTGCAGACAGTTTGATCACAAATACAAG 2589
Query 970 TCTCTATCGGAGTTGAAGAGTGATGAGAGTGAACCAGATGGGGCACTTGCAACTGTCCTG 1029
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 2590 TCTCTATCGGAGTTGAAGAGCGATGAGAGTGAACCAGATGGGGCACTTGCAACAGTTCTG 2649
Query 1030 AAA 1032
|||
Sbjct 2650 AAA 2652
Score = 534 bits (289), Expect = 6e-151
Identities = 343/369 (93%), Gaps = 3/369 (1%)
Strand=Plus/Plus
Query 1066 AATGTGGATGAAGGCATATCAAACAGAGATGTTAGGTTAATGCTGAAACAAGTGCGTAAA 1125
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2653 AATGTGGATAAAGACATATCAAACAGAGATGTTAGGTCAATGCTGAAACAAGTGCGTAAA 2712
Query 1126 GAGATACTTAAAGGATGTAAAATAGTGTTCAGTCGGGTGTTCCCAACCAAGGCAAAGCCA 1185
||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2713 GAGGTACTCAAAGGATGTAAAGTAGTGTTCAGTCGGGTGTTCCCAACCAAGGCTAAGCCA 2772
Query 1186 GAAGATCACCCCCTGTGGAAAATGGCTGAGGAACTGGGAGCCACCTGCGCAACGGAAGTG 1245
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2773 GAAGATCACCCTCTGTGGAAAATGGCCGAGGAACTGGGAGCCACCTGTGCAACGGAAGTG 2832
Query 1246 GATGCATCAGTGACACACGTTGTGGCAATGGATGTGGGAACAGAGAAGGCTCGTTGGGCC 1305
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 2833 GATGCATCAGTGACACACGTGGTGGCTATGGATGTGGGAACAGAGAAGGCACGTTGGGCA 2892
Query 1306 GTTAGAGAGAAGAAGTATGTGGTTCATAGAGGATGGATAGATGCAGCTAATTACCTTTGG 1365
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2893 GTAAGAGAGAAGAAGTATGTGGTTCATAGAGGATGGATAGATGCAGCTAATTACCTGTGG 2952
Query 1366 ATGAAACAGCCAGAAGAGAACTTCGGTTTAGAGCAGCTCAAGAAGCAATT-G-ACCG-AA 1422
| ||| |||||||||||||| ||| ||||||||||||||||||||||| | | || ||
Sbjct 2953 AAGAAGCAGCCAGAAGAGAAGTTCAGTTTAGAGCAGCTCAAGAAGCAACAAGTAGCGGAA 3012
Query 1423 GAAGAGTGA 1431
|||||||||
Sbjct 3013 GAAGAGTGA 3021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5