BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G58005.1

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495905 jgi|Araly1|495905|fgenesh2_kg.8__1721__AT5G58005.1         715    0.0  


> Ahg495905 jgi|Araly1|495905|fgenesh2_kg.8__1721__AT5G58005.1
Length=461

 Score =  715 bits (387),  Expect = 0.0
 Identities = 439/463 (95%), Gaps = 8/463 (2%)
 Strand=Plus/Plus

Query  21   TTCTGATTCCGTCTTCTTCGCTTAG--A--CATGGCTCTCGATACTTATGCGTCGTCGAA  76
            ||||| |||||||||||||||||||  |  ||||||||||||||| || |||||||||||
Sbjct  2    TTCTGTTTCCGTCTTCTTCGCTTAGACATCCATGGCTCTCGATACGTACGCGTCGTCGAA  61

Query  77   CCCTAATGATGTTCATGAGGATGTTCTTCTTAAAGCTAGAGATGCTTGTTACAAGGCCAG  136
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  62   CCCTAATGAGGTTCATGAGGATGTTCTTCTTAAAGCTAGAGATGCTTGCTACAAGGCCAG  121

Query  137  AGATGCTTTTTACGCTTGTCTAGAAAAGGAATCTGGTAAAAAACCAACTGAAATCGCCAC  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  122  AGATGCTTTTTACGCTTGTCTAGAAAAGGAATCTGGTAAAAAACCAACTGAAATCGCGAC  181

Query  197  CGTGGGTCTTCTCTATCCTAAGGAGTGTAGCAATTCTAGAACCCAATTCGTCAACAACTG  256
            ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  182  CGTTGGTCTTCTCTACCCTAAGGAGTGTAGCAGTTCTAGAACCCAATTCGTCAACAACTG  241

Query  257  TCGGTCCTCTTGGGTGAAACATTTCGATAGAGAGTACTGTAGGAACAAGAGAGTTCAAAG  316
            ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  242  TCGCTCCTCTTGGGTGAAGCATTTCGATAGAGAGTACTGTAGAAACAAGAGAGTTCAAAG  301

Query  317  GCTGTTGGATGATGGAGATGAGAGGAAAGGTCCAATGTCACTTCCTCAGCCTTACACTTT  376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  GCTGTTGGATGATGGAGATGAGAGGAAAGGTCCAATGTCACTTCCTCAGCCTTACACTTT  361

Query  377  CAAGCCTTCTCCTTCCACTTAGAAGATTCCTTCCTTTC-TGGTGTTGAGGAAGATTACAA  435
            ||||||||| ||||||||||||| | | |||||||||| |||| ||||||||||||||||
Sbjct  362  CAAGCCTTCCCCTTCCACTTAGA-G-T-CCTTCCTTTCCTGGTATTGAGGAAGATTACAA  418

Query  436  TGGCCAAATACTGTTCCTGAATCATTTTCTTTGCCTAGTTTTT  478
            ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  419  TGGTCAAATACTGTTCCTGAATCATTTTCTTTGCCTAGTGTTT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22645012698


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5