BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58020.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495908 jgi|Araly1|495908|fgenesh2_kg.8__1724__AT5G58020.1 2021 0.0
> Ahg495908 jgi|Araly1|495908|fgenesh2_kg.8__1724__AT5G58020.1
Length=1306
Score = 2021 bits (1094), Expect = 0.0
Identities = 1241/1312 (95%), Gaps = 10/1312 (1%)
Strand=Plus/Plus
Query 6 CTCTCTCCTCGACCCTTTAATTTCTAATCACCGACCAAAATTGATCGGAAACCTAGAGCT 65
||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCCTCGACCCCTAAATTTCCAATCACCGACCAAAATTGATCGGAAACCTAGAGCT 60
Query 66 CTTCGTATTGCTCCGCCACCATGCATAT-CCGGCGCCAGATCTTCGTTAAATCTCCTGAC 124
|||||||||| ||||||||||||||| | |||||||||||||||||| |||||||| |||
Sbjct 61 CTTCGTATTGTTCCGCCACCATGCAT-TGCCGGCGCCAGATCTTCGTCAAATCTCCAGAC 119
Query 125 TGTCAAAAAGTCGTCGCTCTGCAATTGGATCCTGCGCAATCTCTATTAACTCTTTCGGGT 184
|||||| ||||| |||||||||||||||| ||| |||||||| ||||||||||||| |||
Sbjct 120 TGTCAACAAGTCTTCGCTCTGCAATTGGAACCTTCGCAATCTGTATTAACTCTTTCCGGT 179
Query 185 ATCACTTCCTTACTCGAATCGTCGCAGCGTATATCGTTTTCGGCTTGCT-CGATTACTCT 243
||||||||||||||||||||||||||||||| |||||| |||| || || || || | ||
Sbjct 180 ATCACTTCCTTACTCGAATCGTCGCAGCGTAAATCGTTATCGGATTTCTCCG-TTGCCCT 238
Query 244 AGATGGGAAGCTTTTGAATGGCTCTACACGGATCCAAGTATCGAAGCTTCCTTCTGTATC 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 AGATGGGAAGCTTTTGAATGGCTCTACACGGATCCAAGTATCTAAGCTTCCTTCTGTATC 298
Query 304 CATGCTCACTCTTTTCCCTCGCCTCCGTGGAGGTGGAGGAGATGGTGGGGCAACGGGAGC 363
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 299 CATGCTCACTCTGTTCCCTCGCCTCCGTGGAGGTGGAGGAGATGGAGGTGCGACGGGAGC 358
Query 364 CGAGTCTCGCGATTGCTATCTCAATATGTACGCGGAGAAGAAACCTGACAAGGTTGATCC 423
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGAGTCTCGCGATTGCTACCTGAATATGTACGCGGAGAAGAAACCTGACAAGGTTGATCC 418
Query 424 TAATGAGCAGAGGCTCTCCAAATGGTTGAATTGTGCTTTGTCTAACGAGCCTTTGGCTGA 483
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 GAATGAGCAGAGGCTCTCCAAATGGTTGAATTGTGCTTTGTCTAACGAACCTTTGGCTGA 478
Query 484 GCCGTGCGTGATTGATCTCCTTGGGAATTTGTTCAATAAAGAAGTTTTGGTGCACGCTTT 543
||| |||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 479 GCCTTGCGTGATTGATCTCCTTGGGAATTTGTTCAATAAAGAAGCTTTGGTTCATGCTTT 538
Query 544 GTTGTCTAAGAGGTTGCCTAAACAATTCTCGTACATTAAGGGTTTGAAAGATATGGTGAA 603
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTATCTAAGAAGTTGCCTAAACAATTCTCGTACATTAAGGGTTTGAAAGATATGGTGAA 598
Query 604 TATTAAGCTTACGCCTGTTGCTGGTTCTGATGGTTCATCGCAAGATACGACTAGTGCACA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 599 TATTAAGCTTACGCCTGTTGCTGGTTCTGATGGTTCATCGCAAGATACGACTAGTTCCCA 658
Query 664 GTTTCAGTGTCCGGTCTCAGGGCTTGAATTCAATGGAAAGTACAAGTTTTTCGCTTTGAG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTTTCAGTGTCCGGTCTCAGGGCTTGAATTCAATGGAAAGTACAAGTTTTTCGCTTTGAG 718
Query 724 GGGATGTGGACATGTGATGAGCGCAAAGGCGTTGAAGGAAGTGAAGTCTTCTTCTTGTTT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGGATGTGGACATGTGATGAGCGCAAAGGCGTTGAAGGAAGTGAAGTCTTCTTCTTGTTT 778
Query 784 GGTGTGTCATGCGGATGTCAAAGATTCTGATAAGATTGTGATCAATGGTACTgaggagga 843
||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GGTATGTCATGCAGATGTCAGAGATTCTGATAAGATTGTGATCAATGGTACAGAGGAGGA 838
Query 844 agtagatttgttgagggagaggatggaggaggagaaagctaagctgagagagaagaAAGG 903
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTGGGTTTGTTGAGGGAGAGGATGGAGGAGGAGAAAGCTAAGCTGAGAGAGAAGAAAGG 898
Query 904 TGTCTCAAAGAAGAGTAAGAACGGTGCTGCTGTGGTGGCTGATACAGGTGCGAAGGTCGC 963
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 TGTCTCAAAGAAGAGCAAGAACGGTGCTGCTGTGGTGGCTGATACAGGAGCGAAGGTCGC 958
Query 964 AAAGAGACAGATAGAGGATGGGAATGTCAATGGCAATGGTATAACTGTGAAGAAATTCAA 1023
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 TAAGAGACAGATGGATGATGGGAATGTCAATGGCAATGGTATTACTGTGAAGAAATTCAA 1018
Query 1024 GGCGGCGGATAAAGTGCCGGTTAATGCTACTAAGGAAGTCTATGCTTCTCTCTTTACTTC 1083
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGCGGGGGATAAAGTACCGGTTAATGCTACTAAGGAAGTCTATGCTTCTCTCTTTACTTC 1078
Query 1084 CTCTAAGAAGAAGTCTGATTTCAGGGAGACTTACTCTTGCAGGTCACTTCCTCTCGGCAG 1143
||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1079 CTCCAAGAAGAAGTCTGATTTCAAGGAGACTTACTCTTGCAGGTCAATCCCTCTCGGCAG 1138
Query 1144 GAATTGATTTGTTGGATCAA-TGTTGTTTACCT-GCTCGCTTCATTTGCTCTGTAATCTG 1201
||| |||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct 1139 GAACTGATTTGTTGGA-CAAATGTTGTTTACCTTGCTTGCTTCATTTGCTCTGTAATCTG 1197
Query 1202 TTTTGATTATATTGATATATCAACTTGCTTTTGTAATTTCGCCTACTGGATAATATAATG 1261
|| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 1198 TTCTGATTATATTGATATATCAACTTGCTTT-GTAAGTTCGCC-ACTGGATAATATAATG 1255
Query 1262 TTTTTCTTTTCCTTTTGCAATTGGTAAAAACAGTAAACATGTTTGCATCCAC 1313
| |||||||| |||| |||||||||||||| | |||||||||||||||||||
Sbjct 1256 TGTTTCTTTTTCTTTCGCAATTGGTAAAAAGA-TAAACATGTTTGCATCCAC 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5