BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G58030.1

Length=969
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950504 jgi|Araly1|950504|scaffold_802391.1                       1105    0.0  


> Ahg950504 jgi|Araly1|950504|scaffold_802391.1
Length=670

 Score = 1105 bits (598),  Expect = 0.0
 Identities = 646/670 (96%), Gaps = 0/670 (0%)
 Strand=Plus/Plus

Query  117  CTCACCGGAAAACCGAAGAATATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTC  176
            ||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTCACCGGAGAATCGAAAAAGATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTC  60

Query  177  CTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGGTGAGCTTGACCGCATTTGCTTTCTTA  236
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTTGACAAGCCTCTTAGCAAAGGCAAGCAAGAGGTGAGCTTGACCGCATTTGCTTTCTTA  120

Query  237  TTCTCGGAGCTCGTTCAGTACAATCAAACCCAGGTTGACAATATAGCTGAACTTGAAAGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  TTCTCGGAGCTCGTTCAGTACAATCAAACCCAGGTTGACAATATAGCTGAACTGGAAAGA  180

Query  297  AGACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTAGAGCTTCTTTGCAACCGG  356
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  AGACTAGAGGATGCTGGGTATGCAGTTGGATCTCGAGTTCTGGAGCTTCTTTGCAACCGG  240

Query  357  GAAAAGGGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGTACT  416
            || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  GAGAAGGGCAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTCCACAGTACT  300

Query  417  GTGTGGAAAGTGTTGTTTGGAAAGGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAA  476
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  GTGTGGAAGGTGTTGTTTGGGAAGGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAA  360

Query  477  GATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGGTTCATTTCGATTCCAAAA  536
            |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct  361  GATGAGTACATGATCAGTGAAAAGGAGCTTCTCGTCAACAGGTTCATTTCGATCCCAAAA  420

Query  537  GACATGGGAACATTCAACTGCGGAGCGTTTGTTGCTGGCATAGTGAAGGGAGTTCTGGAT  596
            ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct  421  GACATGGGAACATTCAACTGCGGGGCGTTTGTGGCCGGCATAGTGAAGGGAGTTCTGGAT  480

Query  597  AACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGT  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  AACGCAGGGTTTCCTGCTGTGGTAACGGCTCATTTTGTACCCATTGAAGGACAACAACGT  540

Query  657  CCTCGAACTACTATTTTGATCAAGTTTGCTGATGAGGTGCTTAAGAGAGAGGCACGGCTA  716
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  541  CCTCGGACTACTATTTTGATCAAGTTTGCTGATGAGGTGCTTAAAAGAGAGGCACGGCTA  600

Query  717  AGCCAATGAGAGTACTATGGTCACGAGTTTCCACGATCTGGAAACTATTGGCTTTATGTG  776
            ||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  601  AGCCAATGAGAGCGCTATGGTCACGAGTTGCCACGATCTGGGAACTATTGGCTTTATGTG  660

Query  777  AACTGCTTGT  786
            ||||||||||
Sbjct  661  AACTGCTTGT  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35988033648


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5