BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58050.1
Length=2599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950506 jgi|Araly1|950506|scaffold_802393.1 3465 0.0
Ahg950518 jgi|Araly1|950518|scaffold_802405.1 3127 0.0
> Ahg950506 jgi|Araly1|950506|scaffold_802393.1
Length=2305
Score = 3465 bits (1876), Expect = 0.0
Identities = 2164/2305 (94%), Gaps = 12/2305 (1%)
Strand=Plus/Plus
Query 73 GATCAATCAGATAGAGATGCTGAGGTTTTTCATTCTTTTCTCCCTTTTCTTACACTCTTC 132
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 6 GATCAATCACA-AGAGATGCTGAGGTTTTTCATTCTTTTCTCCCTTTTCTTACACTCCTG 64
Query 133 TGTTGCGGCACCCAAGACTCCTGCTGCTGCCGCAGCTGTTCCTGCCAAGAAATGGCTTAC 192
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 65 TGTTGCGGCACCCAAGACTCCTGCTGCTGCCGCGGCTGTTCCTGCCAAGAAATGGCTTAC 124
Query 193 CCTTAACGGACAAGAGCCTGCCGTTGTGGCCAGAGGGGGCTTCTCGGGTCTTTTCCCTGA 252
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 125 CCTTAACGGACAAGAGCCTGCCGTTGTGGCCAGAGGCGGCTTCTCGGGTCTTTTCCCTGA 184
Query 253 GTCAAGCATCTCTGCAAACGACTTGGCTATTGGCACCAGCTCGCCTGGCTTCACAATGTT 312
||||||| | ||||||||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct 185 GTCAAGCGCCCCTGCAAACGACATGGCTGTTAGCACCAGCTCGCCTGGCCTCACAATGTT 244
Query 313 GTGCAACCTTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTTGA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTGCAACCTTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTTGA 304
Query 373 CAATGCAACCACCATCTCCTCGGTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAACGG 432
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 305 CAATGCAACCACCATCTCCTCGCTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAACGG 364
Query 433 TCAGGACCTCAAGGGCTGGTTTGTCATTGATTACGATGCCGACACCATATTCAACAAAGT 492
||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||
Sbjct 365 TCAGGACCTCAAGGGCTGGTTTGTCCTTGATTACGATGCCGACACCATCTTCTCCAATGT 424
Query 493 CACTCTGGTCCAGAACATCTTCTCTCGGCCTAGCATCTTCGACGGCCAAATGTCGGTTTC 552
| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 425 CTCTCTGGTCCAAAACATCTTCTCTCGGCCCAGCATCTTCGACGGCCAAATGCCGGTTTC 484
Query 553 TGCAGTGGAGGATGTCCTTGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTACGA 612
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CGCAGTGGAGGACGTCCTCGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTACGA 544
Query 613 TGCCTTCTACATGGAACACAAGCTGAGCCCAGCCGAGTACCTGAGAAGCTTGCGATTCCG 672
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 545 TGCCTTCTACATGGAACACAAGCTGAGCGCAGCCGAGTACCTGAGAAGCTTGCGATTCCG 604
Query 673 CGGCATTAATGTCATCTCATCTCCAGAGATTGGTTTCTTGAAGAGCATCGGGATGGACGC 732
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 605 CGGCATTAATGTCATTTCATCTCCAGAGATAGGTTTCTTGAAGAGCATTGGGATGGACGC 664
Query 733 GGGCAGGGCCAAGACAAAGCTCATATTTGAGTTCAAAGACCCCGAGGCAGTTGAGCCCAC 792
||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 665 AGGCAGGGCCAAAACAAAGCTCATATTCGAGTTCAAAGAGCCCGAGGCAATTGAGCCCAC 724
Query 793 CACCAACAAGAAGTACAGCGAGATTCAGCAGAACCTCGCAGCCATCAAGGCCTTTGCTTC 852
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 725 CACAAACAAGAAGTACAGCGAGCTTCAGCAGAACCTCGCAGCCATCAAGGCCTTTGCTTC 784
Query 853 AGGCGTTCTTGTGCCCAAAGACTACATTTGGCC-CATTGACTCAGCTAAGTACCTTAAGC 911
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 785 AGGCGTTCTTGTCCCCAAAGACTACATTTGGCCTC-TTGACTCAGCTAAGTACCTTAAGC 843
Query 912 CCGCCACCACTTTTGTGGCTGATGCTCACAAAGCCGGTCTAGAGGTCTATGCTTCAGGGT 971
| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 844 CTGCCACCACTTTTGTGGCTGATGCCCATAAAGCCGGTCTAGAGGTCTATGCTTCTGGGT 903
Query 972 TTGCCAACGACTTGCGCACCAGCTTTAACTACAGCTATGATCCCTCTGCTGAGTATCTCC 1031
||||||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 904 TTGCCAACGACATGCGCACTAGCTTCAACTACAGCTACGATCCCTCCACTGAGTATCTCC 963
Query 1032 AGTTTGTGGACAATGGCCAGTTCTCTGTTGATGGTGTCATCACCGA-TTTCCCGCCAACA 1090
||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 964 AGTTTGTGGACAATGGCGAGTTCTCTGTTGATGGCGTCATCACCGACTTTCCA-CCAACA 1022
Query 1091 GCATCACAATCAATCACTTGCTTTTCTCACCAAAACGGCAATCTCCCCAAAGCAGGGCAT 1150
||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1023 GCATCACAAGCCATCACTTGCTTTTCTCACCAAAAGGGCAATCTCCCAAAAGCAGGGCAT 1082
Query 1151 GCATTGGTTATAACTCACAATGGAGCAAGCGGAGACTATCCAGGCTGCACTGATCTGGCT 1210
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1083 GCATTAGTTATAACTCACAATGGAGCAAGCGGGGACTATCCAGGCTGCACTGATCTGGCT 1142
Query 1211 TACCAGAAAGCAATCGACGATGGAGCAGACATAATTGACTGCTCTGTTCAGATGTCCAAA 1270
|||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||
Sbjct 1143 TACCAGAAAGCAATCGACGATGGAGCAGACGTGATCGACTGCTCTGTTCAGATGTCTAAA 1202
Query 1271 GACGGAATCGCTTTCTGCCATGATGCTGCAGACCTCTCAGCAAGTACCACCGCCAGGACT 1330
|| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||
Sbjct 1203 GATGGAATCGCTTTCTGCCATGATGCTGCAGACCTCACAGCAAGCACCACTGCCATGACT 1262
Query 1331 ACTTTCATGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGAATCTTCTCT 1390
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1263 ACTTTCATGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGCATTTTCTCT 1322
Query 1391 TTTGATCTTACATGGGCCGAGATCCAGTCTGTGAAGCCACAAATAGAAAACCCCTTCACT 1450
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1323 TTTGATCTTACATGGGCCGAGATACAGTCTGTGAAGCCACAAATCGAGAACCCCTTCACT 1382
Query 1451 GCCACGGGCTTCCAGAGAAACCCCGCAAACAAGAACGCCGGGAAGTTCACGACTCTTGCG 1510
|||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1383 TCCACGGGCTTCCTGAGAAATCCAGCAAACAAGAACGCTGGGAAGTTCACGACTCTTGCG 1442
Query 1511 GACTTCCTTGAGCTCGGCAAAGCAAAGGCAGTCACCGGAGTTTTAATCAACATTCAGAAT 1570
||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 1443 GACTTCCTTGAGCTCAGCAAAGAAAAGGCAGTCACTGGAGTTTTAATCAACATTGAGAAT 1502
Query 1571 GCTGCTTATTTAGCCTCGAAGAAAGGCTTAGGAGTCGTAGACGTAGTCAAGTCTGCTCTT 1630
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 1503 GCTGCTTATTTAGCCTCGAAGAAAGGCCTAGGAATCGTAGACGCAGTCAAGTCTGCTCTG 1562
Query 1631 ACAAATTCCACACTCGACAAGCAATCAACCCAGAAGGTTTTGATTCAGTCGGATGACAGT 1690
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1563 ACCAATTCCACACTCGACAAGCAATCAACTCAGAAGGTTTTGATTCAGTCGGATGACAGT 1622
Query 1691 TCAGTTCTATCTAGTTTCGAGGCTGTCCCTCCTTACACAAGAGTCTTGAGTATCGACAAG 1750
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1623 TCAGTTCTATCTAGTTTCGAGGCTGTCCCTCCTTACACTAGAGTCTTGAGTATCGACAAG 1682
Query 1751 GAGATCGGAGATGCTCCTAAGACATCCATCGAAGAAATCAAGAAGCATGCAGATGCTGTC 1810
||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||
Sbjct 1683 GAGATCGGAGATGCTCCTAAGCCATCCGTCGAAGAAATCAAGAAGCACGCAGATGCCGTC 1742
Query 1811 AATCTCTTGAGAACTTCCCTCATCACCGTCTCCCAAAGCTTTGCCACGGGGAAAACTAAT 1870
|||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1743 AATCTCATGAGAACTTCCCTCGTCACCGTCTCCCAAAGCTTTGCCACAGGAAAAACTAAC 1802
Query 1871 GTGGTAGAGGAAATGCACAAAGCGAATATCTCTGTATACGTCTCGGTGCTAAGAAATGAG 1930
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1803 GTGGTAGAGGAAATGCACAAAGCGAATATCTCTGTTTACGTCTCGGTCCTAAGAAATGAG 1862
Query 1931 TACATCGCCATAGCGTTCGACTACTTCTCTGATCCTACGATAGAGCTTGCAACATTCATT 1990
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1863 TACATCTCCATAGCGTTCGACTACTTCTCTGATCCTACGGTAGAGCTTGCAACATTCATT 1922
Query 1991 GCAGGGAGAGGCGTTGATGGAGTCATCACGGAGTTCCCTGCCACCGCTACCAGATACCTA 2050
|||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 1923 GCAGGGAGTGGCGTCGATGGAGTAATCACAGAGTTCCCTGCCACCGCAACCAGATACTTA 1982
Query 2051 AGGAGTCCATGTTCAGATTTGAACAAAGACCAGCCCTATGCCATCTTACCTGCAGATGCT 2110
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1983 AGGAGTCCATGCTCAGATTTAAACAAAGACCAGCCCTATGCCATCTTACCTGCAGAAGCT 2042
Query 2111 GGAGCTCTACTCACCGTGGCAGACAAGGAAGCACAACTACCAGCTATTCCCCCAAACCCA 2170
|| ||||||||| |||| ||||||||||||||||||| |||||||| | | |||||||||
Sbjct 2043 GGCGCTCTACTCTCCGTTGCAGACAAGGAAGCACAACCACCAGCTAGTGCGCCAAACCCA 2102
Query 2171 CCTCTTGATGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAAGTTGGCCTCC 2230
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 2103 CCTCTTGATGCCAAAGACGTGATTGATCCGCCTCTGCCCCCGGTTGCAAACATGGCCTCC 2162
Query 2231 ---AATGGAACTGAAGGTGGTCCGCCACAAACTCCTCCT-CGTTCAGGCACCGTTGCCAT 2286
||||| |||| || ||||||||||| ||||||||| | ||||||||||| |||||
Sbjct 2163 TCCAATGGGACTGGAGAAGGTCCGCCACATACTCCTCCTTC-TTCAGGCACCGGTGCCAC 2221
Query 2287 TGCTGCTAATCTCAGCCTTTCCTTGCTGGCAATGATGGCTTTGGGACTCCTTTATACAGC 2346
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2222 TGCTGCTAATCTCAGCCTTTCCTTGCTGGCAATGATGGCTTTGGGAATCCTATATACAGC 2281
Query 2347 CTAA-AGAGATTGATCACACCATAT 2370
|||| | ||||||||||| ||||||
Sbjct 2282 CTAATA-AGATTGATCACTCCATAT 2305
> Ahg950518 jgi|Araly1|950518|scaffold_802405.1
Length=2306
Score = 3127 bits (1693), Expect = 0.0
Identities = 2079/2266 (92%), Gaps = 23/2266 (1%)
Strand=Plus/Plus
Query 85 AGAGATGCTGAGGTTTTTCATTC-TTTTCTCCCTTTTCT-TACACTCT-TCTGTTGCGGC 141
|||||||||||||||| ||| || ||||||||||||| | |||||| | | |||||||||
Sbjct 17 AGAGATGCTGAGGTTTATCA-TCTTTTTCTCCCTTTT-TATACACT-TATGTGTTGCGGC 73
Query 142 ACCCAAGACTCCTGCTG-CTGCCGCAGCTGTTCCTGCCAAGAAATGGCTTACCCTTAACG 200
|||||||||||||| | ||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 74 CCCCAAGACTCCTGC-GTCTGCCGCTGCTGTTCCTACCAAGAAATGGCTCACCCTTAACG 132
Query 201 GACAAGAGCCTGCCGTTGTGGCCAGAGGGGGCTTCTCGGGTCTTTTCCCTGAGTCAAGCA 260
| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 133 GGCAAGAGCCTGCAGTTGTGGCCAGAGGCGGCTTCTCGGGTCTTTTCCCTGAGTCAAGCG 192
Query 261 TCTCTGCAAACGACTTGGCTATTGGCACCAGCTCGCCTGGCTTCACAATGTTGTGCAACC 320
| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 193 CCCCTGCAAACGACATGGCTATTAGCACCAGCTCGCCTGGCCTCACAATGTTGTGCAACC 252
Query 321 TTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTTGACAATGCAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TTCAGATGACTAAGGACGGTGTGGGCCTTTGCTTGTCAGATATCAGACTTGACAATGCAA 312
Query 381 CCACCATCTCCTCGGTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAACGGTCAGGACC 440
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 313 CCACCATCTCCTCGCTCTTCCCCAAAGCCCAGAAGACCTACAAGGTCAATGGTCAGGACC 372
Query 441 TCAAGGGCTGGTTTGTCATTGATTACGATGCCGACACCATATTCAACAAAGTCACTCTGG 500
||||||||||||||||| ||||||| |||||||||||||| ||| ||| ||| || |||
Sbjct 373 TCAAGGGCTGGTTTGTCCTTGATTATGATGCCGACACCATCTTCTCCAATGTCTCTTTGG 432
Query 501 TCCAGAACATCTTCTCTCGGCCTAGCATCTTCGACGGCCAAATGTCGGTTTCTGCAGTGG 560
|||||||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct 433 TCCAGAACATCTTCTCACGGCCCAGCATCTTTGACGGCCAAATGCCGGTTTCCGCAGTGG 492
Query 561 AGGATGTCCTTGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTACGATGCCTTCT 620
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGGACGTCCTCGGAACCAAGCCTCCCAAGTTCTGGTTGAGCGTTCAGTACGATGCCTTCT 552
Query 621 ACATGGAACACAAGCTGAGCCCAGCCGAGTACCTGAGAAGCTTGCGATTCCGCGGCATTA 680
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 553 ACATGGAACACAAGCTGAGCGCAGCCGAATACCTGAGAAGCTTGCGATTCCGCGGCATTA 612
Query 681 ATGTCATCTCATCTCCAGAGATTGGTTTCTTGAAGAGCATCGGGATGGACGCGGGCAGGG 740
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||
Sbjct 613 ATGTCATCTCATCTCCAGAGATCGGTTTCTTGAAGAGCATTGGGATGGACGCAGGAAGGG 672
Query 741 CCAAGACAAAGCTCATATTT-GAGTTCAAAGACCCCGAGGC-AGTTGAGCCCACCACCAA 798
|||||||||||||||| ||| ||||||||||| |||||||| | ||||||||||||| ||
Sbjct 673 CCAAGACAAAGCTCAT-TTTCGAGTTCAAAGAGCCCGAGGCGA-TTGAGCCCACCACAAA 730
Query 799 CAAGAAGTACAGCGAGA-TTCAGCAGAACCTCGCAGCCATCAAGGCCTTTGCTTCAGGCG 857
||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 CAAGAAGTACAGCGA-ACTTCAGCAGAACCTCGCAGCAATCAAGGCCTTTGCTTCAGGCG 789
Query 858 TTCTTGTGCCCAAAGACTACATTTGGCCCATTGACTCAGCTAAGTACCTTAAGCCCGCCA 917
||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 790 TTCTTGTCCCCAAAGACTACATCTGGCCCCTTGACTCAGCTAACTACCTTAAGCCCGCCA 849
Query 918 CCACTTTTGTGGCTGATGCTCACAAAGCCGGTCTAGAGGTCTATGCTTCAGGGTTTGCCA 977
|||| |||||||||||||| |||||||| ||||||||||| |||||||| || |||||||
Sbjct 850 CCACCTTTGTGGCTGATGCCCACAAAGCTGGTCTAGAGGTGTATGCTTCTGGATTTGCCA 909
Query 978 ACGACTTGCGCACCAGCTTTAACTACAGCTATGATCCCTCTGCTGAGTATCTCCAGTTTG 1037
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACGACATGCGCACCAGCTTCAACTACAGCTATGATCCCTCTGCTGAGTATCTCCAGTTTG 969
Query 1038 TGGACAATGGCCAGTTCTCTGTTGATGGTGTCATCACCGATTTCCCGCCAACAGCATCAC 1097
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 970 TGGACAATGGCCAGTTCTCTGTTGATGGAGTTATCACCGATTTCCCGCCAACAGCATCAC 1029
Query 1098 AATCAATCACTTGCTTTTCTCACCAAAACGGCAATCTCCCCAAAGCAGGGCATGCATTGG 1157
|||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1030 AATCCATCACGTGCCTTTCTCACCAAAAGGGCAATCTCCCCAAAGCAGGGCATGCATTGG 1089
Query 1158 TTATAACTCACAATGGAGCAAGCGGAGACTATCCAGGCTGCACTGATCTGGCTTACCAGA 1217
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1090 TTATAACTCACAATGGAGCAAGCGGGGACTATCCAGGCTGCACAGATCTGGCTTACCAGA 1149
Query 1218 AAGCAATCGACGATGGAGCAGACATAATTGACTGCTCTGTTCAGATGTCCAAAGACGGAA 1277
||||| ||||||| ||||||||| | || || ||||||||||||||||||||||||||||
Sbjct 1150 AAGCAGTCGACGAGGGAGCAGACGTGATCGATTGCTCTGTTCAGATGTCCAAAGACGGAA 1209
Query 1278 TCGCTTTCTGCCATGATGCTGCAGACCTCTCAGCAAGTACCACCGCCAGGACTACTTTCA 1337
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1210 TCGCTTTCTGCCATGATGCTGCAGACCTCACAGCAAGTACCACCGCCATGACTACTTTCA 1269
Query 1338 TGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGAATCTTCTCTTTTGATC 1397
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1270 TGTCCCGAGCCACCAGCGTTCCTGAGATCCAGCCTACCAACGGCATTTTCTCTTTTGATC 1329
Query 1398 TTACATGGGCCGAGATCCAGTCTGTGAAGCCACAAATAGAAAACCCCTTCACTGCCACGG 1457
| || |||||||||||||||||||||||||||||||| || | ||||||||||||||| |
Sbjct 1330 TCACCTGGGCCGAGATCCAGTCTGTGAAGCCACAAATCGAGAGCCCCTTCACTGCCACAG 1389
Query 1458 GCTTCCAGAGAAACCCCGCAAACAAGAACGCCGGGAAGTTCACGACTCTTGCGGACTTCC 1517
|||||||||||||||| ||||||||||| ||||||||||||| ||||| || || || |
Sbjct 1390 GCTTCCAGAGAAACCCAGCAAACAAGAATGCCGGGAAGTTCATAACTCTCGCAGAATTTC 1449
Query 1518 TTGAGCT-CGGCAAAGCAAAGGCAGTCACCGGAGTTTTAATCAACATTC-AGAATGCTGC 1575
|||| || | ||||||||||||||||| |||||||| | |||||||| | ||||||||||
Sbjct 1450 TTGA-CTTCAGCAAAGCAAAGGCAGTCGCCGGAGTTCTGATCAACAT-CGAGAATGCTGC 1507
Query 1576 TTATTTAGCCTCGAAGAAAGGCTTAGGAGTCGTAGACGTAGTCAAGTCTGCTCTTAC-AA 1634
|||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||| | ||
Sbjct 1508 TTATTTAGCCTCAAAGAAAGGCTTAGGAGTCGTAGACGCAGTTAAGTCGGCTCTGGCCAA 1567
Query 1635 ATTCCACACTCGACAAGCAATCAACCCAGAAGGTTTTGATTCAGTCGGATGACAGTTCAG 1694
|| |||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||
Sbjct 1568 AT-CCACACTCGACAAGCAATCAACTCAGAAAGTTTTGATTCAGTCAGATGACACTTCAG 1626
Query 1695 TTCTATCTAGTTTCGAGGCTGTCCCTCCTTACACAAGAGTCTTGAGTATCGACAAGGAGA 1754
|||| | ||||| |||||||| ||||| ||||| ||||||||||| || || ||||| |
Sbjct 1627 TTCTGGCCAGTTTTGAGGCTGTACCTCCGTACACCAGAGTCTTGAGCATTGAAAAGGAAA 1686
Query 1755 TCGGAGATGCTCCTAAGACATCCATCGAAGAAATCAAGAAGCATGCAGATGCTGTCAATC 1814
|||||| |||||| ||| |||| | || |||||||||||| | ||||||||||||||||
Sbjct 1687 TCGGAGGTGCTCCCAAGCCATCGGTTGATGAAATCAAGAAGTACGCAGATGCTGTCAATC 1746
Query 1815 TCTTGAGAACTTCCCTCATCACCGTCTCCCAAAGCTTTGCCACGGGGAAAACTAATGTGG 1874
|| |||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1747 TCATGAGAACTTCCCTCGTCACCGTCTCCCAAAGCTTTGCCACAGGAAAAACTAACGTGG 1806
Query 1875 TAGAGGAAATGCACAAAGCGAATATCTCTGTATACGTCTCGGTGCTAAGAAATGAGTACA 1934
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1807 TAGAGGAAATGCACAAAGCGAATATCTCTGTTTACGTCTCGGTCCTAAGAAACGAGTACA 1866
Query 1935 TCGCCATAGCGTTCGACTACTTCTCTGATCCTACGATAGAGCTTGCAACATTCATTGCAG 1994
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1867 TCTCCATAGCGTTCGACTACTTCTCTGATCCTACGGTAGAGCTTGCAACATTCATTGCAG 1926
Query 1995 GGAGAGGCGTTGATGGAGTCATCACGGAGTTCCCTGCCACCGCTACCAGATACCTAAGGA 2054
|||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1927 GGAGTGGCGTCGATGGAGTAATCACAGAGTTCCCTGCCACCGCAACCAGATACTTAAGGA 1986
Query 2055 GTCCATGTTCAGATTTGAACAAAGACCAGCCCTATGCCATCTTACCTGCAGATGCTGGAG 2114
||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1987 GTCCATGCTCAGATTTAAACAAAGACCAGCCCTATGCCATCTTACCTGCGGAAGCTGGCG 2046
Query 2115 CTCTACTCACCGTGGCAGACAAGGAAGCACAACTACCAGCTATTCCCCCAAACCCACCTC 2174
|||||||| | || ||||||||||||||||||| |||||||| | | |||||||||||||
Sbjct 2047 CTCTACTCTCTGTTGCAGACAAGGAAGCACAACCACCAGCTAGTGCGCCAAACCCACCTC 2106
Query 2175 TTGATGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAAGTTGGC--C-TCCA 2231
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 2107 TTGATGCCAAAGACGTGATTGATCCGCCTCTGCCTCCAGTTGCAAACTTGGCTGCCTCCA 2166
Query 2232 ATGGAACTGAAGGTGGTCCGCCACAAACTCCTCCTCGTTCAGGCACCGTTGCCATTGCTG 2291
||| ||||| ||| | || |||||| | ||||||| ||||||||||||| |||| |||
Sbjct 2167 ATGCAACTGGAGGAGCTCAGCCACATCCCCCTCCTCCTTCAGGCACCGTTTCCATCACTG 2226
Query 2292 CTAATCTCAGCCTTTCCTTGCTGGCAATGATGGCTTTGGGACTCCT 2337
|||||||| |||||||||||||||||||| |||| |||||| ||||
Sbjct 2227 CTAATCTCGGCCTTTCCTTGCTGGCAATGTTGGCCTTGGGAGTCCT 2272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98006200385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5