BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58060.2
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1 935 0.0
Ahg950519 jgi|Araly1|950519|scaffold_802406.1 418 4e-116
Ahg950520 jgi|Araly1|950520|scaffold_802407.1 113 2e-24
> Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1
Length=941
Score = 935 bits (506), Expect = 0.0
Identities = 594/633 (94%), Gaps = 20/633 (3%)
Strand=Plus/Plus
Query 406 GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCT 465
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 326 GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGGTTCATGGATGATCATTATCCT 385
Query 466 GTTCGAAGTGCTTTCTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAAGAGTTTTGGT 525
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GTTCGAAGTGCTTTTTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAAGAGTTTTGGT 445
Query 526 GAGTCATGGAGGTCTGCAAAAGAAGACTCCAATCAGCCTTGGCCATACTTAACCGAAGCT 585
||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 446 GAGGCATGGAGGTCTGCAAAAGAAGACTCCAGTCAGCCTTGGCCATACTTAACAGAAGCT 505
Query 586 TTAAACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTTG 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 506 TTAAACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTG 565
Query 646 GATGAGACAAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAAG 705
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GATGAGACCAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAAG 625
Query 706 CTGGACAGCCTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCACAGATGTTTTACAAG 765
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCACAGATGTTTTACAAG 685
Query 766 CAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGGAAGTCCTGCTGGGTAT 825
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 686 CAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTGGAAGAG-TCCTGGGTAT 744
Query 826 ATAGTCAACCAAACTTTTGCTGGGGGGAGACTGTTTTTTCTATCGTCTTATCTATACATA 885
|||||||||||||||||||||||||||||||||||||| |||| | | ||| ||
Sbjct 745 ATAGTCAACCAAACTTTTGCTGGGGGGAGACTGTTTTT-CTAT------A-C-ATA--TA 793
Query 886 TAATTCCGTCTGTAGTTTGCATGCATTATTTTGAT-T-CCATAAGTCTCGAGTCGTGTGG 943
| |||||||||||||||||||||||||||| ||| | ||||||| |||| |||||||||
Sbjct 794 -A-TTCCGTCTGTAGTTTGCATGCATTATTT-GATATTCCATAAGACTCGCGTCGTGTGG 850
Query 944 TGTGTTTATCCAAATACATAATGTCAACTTCTGCAAGATTTGAATTGTCTTTCCCAGATT 1003
|||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||
Sbjct 851 TGTGTTTATCCAAATACATAATGTCA-CTTCTGCAAGATTTCAATTGTGTTTGCCAGATT 909
Query 1004 TGATCTGATTGAATTTGTGTGCGCTTCCTTATG 1036
||||||||||||||||| |||||||||||||
Sbjct 910 --ATCTGATTGAATTTGTGCGCGCTTCCTTATG 940
Score = 483 bits (261), Expect = 1e-135
Identities = 300/319 (94%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 13 GCGTTTGGTTCGACACCTCAAAACTTGTTTTGCCTTTAGCATCTCCGAGTAAGGAATCCA 72
|||| ||||||||||||||||||||| |||||||| ||||||||||| | | | ||||
Sbjct 1 GCGTCTGGTTCGACACCTCAAAACTTAATTTGCCTTAAGCATCTCCGACTTA-GTTTCCA 59
Query 73 GGTCCAAAGCCTCTTCTCTTCCTCCTCCTCGCTTCCTTCTCACGCAACCTTGGATCCACC 132
||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 60 GGTCCAACGCCTCTTCTCCT-CTCCTCCTCGCTTCCTTCTCACGCAACCTTCGATCCACC 118
Query 133 GCAGCTATGAAGATCACCGCCTTGCTCGTTCTCAAGTGCGCTCCCGAAGCTTCTGATCCC 192
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 GCAGCTATGAAGATCACCGCCTTGCTGGTTCTCAAGTGCGCTCCCGAAGCTTCTGATCCC 178
Query 193 GTCATCCTCTCCAACGCTTCGGACGTCTCTCACTTCGGTTATTTCCAGCGATCTAGCGTC 252
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTCATCCTCGCCAACGCTTCCGACGTCTCTCACTTCGGTTATTTCCAGCGATCTAGCGTC 238
Query 253 AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCTAGCCGAACCCCTCCTTCCCAACGC 312
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 239 AAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCCAGCCGAACCCCTCCTTCCCAGCGC 298
Query 313 CAGTCTGTTCAACACGAAG 331
|||||||| ||||||||||
Sbjct 299 CAGTCTGTCCAACACGAAG 317
> Ahg950519 jgi|Araly1|950519|scaffold_802406.1
Length=644
Score = 418 bits (226), Expect = 4e-116
Identities = 349/406 (86%), Gaps = 18/406 (4%)
Strand=Plus/Plus
Query 409 CACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTA-CCCTGT 467
||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| ||| ||
Sbjct 234 CACGCTTACAACATAAATCCCCTCTGCGCCGTAGGATTCATGGACGACCATTATCCC-GT 292
Query 468 TCGAAGTG-CTTTCTCTCTTCTCAATCAGGTCCTAGATGAGTACCAGAA-GAGTTTTGGT 525
|||||||| |||| || |||||||| ||||| |||||| ||||| ||| || |||||||
Sbjct 293 TCGAAGTGCCTTT-TCCCTTCTCAACCAGGTATTAGATGCGTACCGGAAGGA-TTTTGGT 350
Query 526 GAGTCATGGAGGTCTGCAAAAGAAGACTCCAATCAGCCTTGGCCATACTTAACCGAAGCT 585
|| ||||||||||||| || |||| | |||||| ||||||||||||| || |||
Sbjct 351 GACACATGGAGGTCTGC-----AA-ACTCTAGTCAGCCGTGGCCATACTTAAAAGAGGCT 404
Query 586 TTA-AACAAATTTCAGGACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTT 644
||| || | |||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 405 TTAGAA-ATATTTCAGGACCCGGCAGAAGCTGATAAGCTGTTGAAAATCCAGAGGGAATT 463
Query 645 GGATGAGACAAAGATTATCCTTCATAAAACCATTGATAGTGTTCTAGCCCGTGGTGAGAA 704
||||||||| ||||||||||||||||||||||||||| |||| || | ||| ||||||||
Sbjct 464 GGATGAGACCAAGATTATCCTTCATAAAACCATTGATGGTGTCCTTGACCGAGGTGAGAA 523
Query 705 GCTGGACAGCCTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATC-ACAGATGTTTTACA 763
|||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 524 GCTGGACAGCTTAGTGGAGAAGAGCTCAGATTTGAGCATGGCATCGA-AGATGTTTTACA 582
Query 764 AGCAAGCGAAGAAAACAAATTCATGCTGTACTA-TTCTGTGAGCTG 808
||||||||||||||||||| || || ||||| | |||| | |||||
Sbjct 583 AGCAAGCGAAGAAAACAAACTCTTGTTGTAC-ACTTCTCTAAGCTG 627
> Ahg950520 jgi|Araly1|950520|scaffold_802407.1
Length=475
Score = 113 bits (61), Expect = 2e-24
Identities = 98/115 (85%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 697 GGTG-AGAAGCTGGACAGCCTAGTGGAGAAGAGCT-CAGATTTGAGCATGGCATC-ACAG 753
|||| || ||||||||||| ||||||||| ||| | || | || ||| ||||||| | ||
Sbjct 348 GGTGAAG-AGCTGGACAGCTTAGTGGAGAGGAG-TACAAAGTTAAGCCTGGCATCTA-AG 404
Query 754 ATGTTTTACAAGCAAGCGAAGAAAACAAATTCATGCTGTACTATTCTGTGAGCTG 808
||||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||
Sbjct 405 ATGTTTTACAAGCAAGCGAAGAAAACAAACTCATGTTGTACAATTCTCTAAGCTG 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5