BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58070.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950508 jgi|Araly1|950508|scaffold_802395.1 976 0.0
Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1 355 3e-97
Ahg950520 jgi|Araly1|950520|scaffold_802407.1 78.7 8e-14
Ahg950519 jgi|Araly1|950519|scaffold_802406.1 67.6 2e-10
> Ahg950508 jgi|Araly1|950508|scaffold_802395.1
Length=610
Score = 976 bits (528), Expect = 0.0
Identities = 584/611 (96%), Gaps = 3/611 (0%)
Strand=Plus/Plus
Query 28 agaagaagaaaagaaaa-agaagagaaatgacagagaagaaagagaTGGAAGTGGTGAAA 86
|||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 AGAAGAAG-AAAGAAAAGAGAAGAGAAATGACAGAGAAGAAAGAGATGCAGGTGGTGAAA 59
Query 87 GGGCTCAACGTGGAGAGATACATGGGCCGTTGGTACGAGATTGCTTCTTTCCCATCAAGG 146
|||||| || |||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 60 GGGCTCGACTTGGAGAGATACATGGGTCGATGGTACGAGATTGCTTCTTTCCCCTCAAGG 119
Query 147 TTTCAGCCAAAGAACGGCGTCGACACTCGCGCCACCTACACCCTTAACCCCGACGGTACC 206
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCAGCCTAAGAACGGCGTCGACACTCGCGCCACCTACACCCTTAACCCCGACGGTACG 179
Query 207 ATACACGTCTTGAACGAAACGTGGAGCAACGGGAAGAGGGGTTTTATCGAAGGCAGCGCC 266
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGCACGTCTTGAACGAAACGTGGAGCAACGGGAAGAGGGGTTTTATCGAAGGCAGCGCC 239
Query 267 TATAAGGCCGATCCTAAAAGCGACGAAGCCAAGCTCAAAGTCAAGTTCTATGTCCCTCCT 326
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 240 TATAAGGCCGATCCTAAAAGCGACGAGGCTAAGCTCAAAGTCAAGTTCTACGTCCCTCCT 299
Query 327 TTCCTCCCAATCATTCCCGTCACCGGAGACTACTGGGTGCTCTACATCGATCCTGACTAC 386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TTCCTCCCAATCATTCCCGTCACCGGCGACTACTGGGTGCTCTACATCGATCCTGACTAC 359
Query 387 CAGCACGCTCTCATTGGCCAGCCTTCCAGGAGTTATCTCTGGATATTGAGCAGGACGGCG 446
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGCACGCTCTCATCGGCCAGCCTTCCAGGAGTTATCTCTGGATATTGAGCAGGACGGCG 419
Query 447 CAAATGGAGGAAGAGACGTATAAGCAGCTGGTGGAGAAGGCAGTGGAGGAAGGTTATGAC 506
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 420 CATATGGAGGAAGAGACGTATAAGCAGCTGGTGGAGAAGGCGGTGGAGGAAGGTTACGAC 479
Query 507 ATCAGCAAGCTTCACAAGACTCCTCAGAGTGACACACCACCTGAGTCCAACACTGCCCCT 566
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 ATCAGCAAGCTTCACAAGACTCCTCAGAGCGACACACCACCTGAGTCCAACACTGCCCCT 539
Query 567 GAAGACTCCAAGGGCGTTTGGTGGTTCAAATCTCTCTTCGGCAAATAGATTACACGGCAC 626
||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 540 GAAGACTCCAAGGGCATTTGGTGGTTCAAATCTCTCTTCGGCAAATAGATTACTCAACAC 599
Query 627 ACAAA-GACTT 636
||||| |||||
Sbjct 600 ACAAAAGACTT 610
> Ahg495912 jgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1
Length=941
Score = 355 bits (192), Expect = 3e-97
Identities = 260/289 (90%), Gaps = 20/289 (7%)
Strand=Plus/Minus
Query 766 CATAAGGAAGCGCACACAAATTCAATCAGATCAAATCTGGGAAAGACAATTCAAATCTTG 825
||||||||||||| ||||||||||||||||| ||||||| ||| |||||| ||||||||
Sbjct 940 CATAAGGAAGCGCGCACAAATTCAATCAGAT--AATCTGGCAAACACAATTGAAATCTTG 883
Query 826 CAGAAGTTGACATTATGTATTTGGATAAACACACCACACGACTCGAGACTTATGG-A-AT 883
|||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| | ||
Sbjct 882 CAGAAG-TGACATTATGTATTTGGATAAACACACCACACGACGCGAGTCTTATGGAATAT 824
Query 884 CAAAATAATGCATGCAAACTACAGACGGAATTATATGTATAGATAAGACGATAGAAAAAA 943
| ||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 823 C-AAATAATGCATGCAAACTACAGACGGAATTATATGTATAGA-AA-A--A--------- 778
Query 944 CAGTCTCCCCCCAGCAAAAGTTTGGTTGACTATATACCCAGCAGGACTTCCAGCTCACAG 1003
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 777 CAGTCTCCCCCCAGCAAAAGTTTGGTTGACTATATACCCAGGACT-CTTCCAGCTCACAG 719
Query 1004 AATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCTGT 1052
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCTGT 670
> Ahg950520 jgi|Araly1|950520|scaffold_802407.1
Length=475
Score = 78.7 bits (42), Expect = 8e-14
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 994 CAGCTCACAGAATAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCT 1050
||||| | ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 459 CAGCTTAGAGAATTGTACAACATGAGTTTGTTTTCTTCGCTTGCTTGTAAAACATCT 403
> Ahg950519 jgi|Araly1|950519|scaffold_802406.1
Length=644
Score = 67.6 bits (36), Expect = 2e-10
Identities = 51/58 (88%), Gaps = 2/58 (3%)
Strand=Plus/Minus
Query 994 CAGCTCACAGAA-TAGTACAGCATGAATTTGTTTTCTTCGCTTGCTTGTAAAACATCT 1050
||||| | |||| | ||||| || || |||||||||||||||||||||||||||||||
Sbjct 627 CAGCTTAGAGAAGT-GTACAACAAGAGTTTGTTTTCTTCGCTTGCTTGTAAAACATCT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5