BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G58090.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495914 jgi|Araly1|495914|fgenesh2_kg.8__1730__AT5G58090.1 2558 0.0
> Ahg495914 jgi|Araly1|495914|fgenesh2_kg.8__1730__AT5G58090.1
Length=1676
Score = 2558 bits (1385), Expect = 0.0
Identities = 1583/1679 (94%), Gaps = 12/1679 (1%)
Strand=Plus/Plus
Query 1 GGAAATAGTACCAGCTAAGCTCGCAGCTCAAAGCTCAGTGTTTAATAATTGTATAGCTTT 60
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 GGAAACAGTACCAGCTAAGCTCGCAGCTCAAAGCTCATTGTGTAATAATTGTATAGCTTT 60
Query 61 TTTGGTG-AACGAAGAGTCAGATCGGCGAGCCTGAGATGGGTTGGGGTTCGGTGTTGCTA 119
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGGTGAAAAGAAGAGTCAGATCGGCGAGCCTGAGATGGGTTGGGGTTCGGTGTTGCTA 120
Query 120 TTACTGGCGGTGGCTCTTCTTTGTCAGAGGGCAAGTTCAATCGGAGCTAACTGGGGCACA 179
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TTCCTGGCGGTGGCTCTGCTTTGTCAGAGGACAAGTTCAATCGGAGCTAACTGGGGCACA 180
Query 180 CAGGCGTCGCACCCACTTCCACCGGACATAGTTGTGCGGATGCTAAGAGAGAATGGTATT 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGGCGTCGCACCCTCTTCCACCGGACATAGTTGTGCGGATGCTAAGAGAGAATGGTATT 240
Query 240 CAGAAAGTAAAGCTCTTTGACGCCGAATACGACACTCTCAGAGCTTTGGGCAAATCCGGA 299
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CAGAAAGTTAAGCTCTTTGACGCCGAGTACGACACTCTCAGAGCTTTGGGCAAATCCGGA 300
Query 300 ATCGAAGTCATGGTTGGTATTCCCAATGAGATGCTTGCGACTCTCGCCTCTAGCCTGAAA 359
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 ATCGAAGTCATGGTTGGTATTCCCAATGAGATGCTTGCAACTCTCGCCTCTAGCCTCAAA 360
Query 360 GCTGCTGAGAAATGGGTTGCTAAAAATGTCTCTACTCACATCTCCACCGACAACGTCAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGCTGAGAAATGGGTTGCTAAAAATGTCTCTACTCACATCTCCACCGACAACGTCAAC 420
Query 420 ATCAGATATGTGGCTGTTGGGAATGAACCTTTCTTGTCTACTTATAATGGGAGCTATCTG 479
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 421 ATCAGATATGTGGCTGTTGGCAATGAACCTTTCTTGTCTACATATAATGGGAGCTATCTG 480
Query 480 AGTACTACTTTCCCTGCGTTGAGGAACATCCAAATTGCAATTATAAAGGCTGGCCTTCAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AGTACTACTTTCCCTGCGTTGAGGAACATCCAAATTGCAATTATAAAGGCTGGACTTCAG 540
Query 540 AACCAAGTGAAGGTCACTTGTCCCTTGAACGCTGATGTCTATGACAGCTCCACCACTTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACCAAGTGAAGGTCACTTGTCCCTTGAACGCTGATGTCTATGACAGCTCCACCACTTTT 600
Query 600 CCTTCTGGAGGGGACTTCAGGGCCAATATCCGTGACCTCATGATCACTATCGTCAAGTTC 659
|||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 601 CCTTCTGGAGGGGATTTCAGAGCTAATATCCGTGATCTCATGATCACTATCGTCAAGTTC 660
Query 660 TTGAGCGAAAATGGCGGTCCTTTCACTGTTAACATCTACCCTTACATCAGTCTTTACACC 719
||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
Sbjct 661 TTGAGCGAAAATGGCGGCCCTTTCACCGTTAACATCTACCCTTTCATCAGTCTTTACAAC 720
Query 720 AACCCCGATTTCCCAGTTGATTACGCCTTCTTTGACGGCAATGCACAGCCCCTGAACGAT 779
||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 721 AACCCCGATTTCCCAGTCGATTACGCTTTCTTTGACGGCAATTCACAGCCCCTGAACGAT 780
Query 780 GGTGGGACTTTTTATTACAACATGTTTGATGCAAATTACGACACCCTAGTCCACGCGTTG 839
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 781 GGTGGGACTTTTTATTACAACATGTTTGATGCAAATTACGACACTCTAGTGCACGCGCTG 840
Query 840 GAGAAGAATGGGTTTGGTAACATGCCTATCATTATTGGGGAAATTGGTTGGCCTACTGAT 899
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 841 GAGAAGAATGGTTTTGGTAACATGCCTATCATAATTGGGGAGATTGGTTGGCCTACTGAT 900
Query 900 GGGGACAGTAATGCGAATTTGGACTACGCTAAGAAGTTCAACCAAGGCTTTATGGCTCAC 959
||||||||||| |||||| |||||||||||| ||||||||||||||| || |||||||||
Sbjct 901 GGGGACAGTAACGCGAATGTGGACTACGCTAGGAAGTTCAACCAAGGGTTCATGGCTCAC 960
Query 960 ATCTCAGGG-GGGAAAGGGACTCCGAGGAGACCTGGCCCTATCGATGCATACCTGTTCAG 1018
||||| ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 961 ATCTC-GGGCGGGAAGGGGACTCCGAGGAGACCTGGCCCTATCGATGCGTATCTGTTCAG 1019
Query 1019 CTTGATAGACGAGGACGCCAAGAGTGTTCAGCCAGGATACTTTGAGCGACACTGGGGGAT 1078
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 CTTGATAGATGAGGACGCCAAAAGTGTTCAGCCAGGATACTTTGAGCGACATTGGGGGAT 1079
Query 1079 ATTCACATTTGACGGCTTACCAAAATATGC-CTTGAACCTAGGGACAACGAACACAGGAG 1137
||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||
Sbjct 1080 ATTCACATTTGACGGCTTACCAAAATAC-CTCTTGAACCTAGGAACAACCAACTCAGGAT 1138
Query 1138 CTCTGATCCAGGCCAAAGGGGTACGCTACCTAGAGAGGAAGTGGTGTGTGATGAAGCCAA 1197
|||||||||| |||||||||||||| || ||| ||||||||||||||||||||| |||||
Sbjct 1139 CTCTGATCCAAGCCAAAGGGGTACGTTATCTACAGAGGAAGTGGTGTGTGATGAGGCCAA 1198
Query 1198 ATGTGAGGTTGGATGATCCGCAGGTAGCTCC-AGCCGTGAGCTACGCGTGTAGCCTTGGG 1256
||||||||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| |||
Sbjct 1199 ATGTGAGGTTGGACGATCCGCAGGTGGCTCCCAGC-GTGAGCTACGCATGTAGCCTCGGG 1257
Query 1257 GACTGTACTAGTCTTGGGGTTGGGACGTCCTGTGCTAATCTTGACGGGAAACAAAACATA 1316
||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 GACTGCACCAGCCTCGGGGTTGGGACGTCCTGTGCGAATCTTGACGGGAAACAAAACATA 1317
Query 1317 TCGTATGCATTCAACAGTTATTATCAGATACAGGATCAGCTTGATACAGCTTGTAAGTTC 1376
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1318 TCGTATGCATTCAACAGTTACTATCAGATACAGGACCAGCTTGATACAGCTTGTAAGTTT 1377
Query 1377 CCAAACATATCAGAGGTGACCAAGACAGATCCATCTACTGGAACTTGCAGATTTCCGATT 1436
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1378 CCAAACATATCAGAGGTGACCAAGACAGATCCCTCTACTGGAACCTGCAGATTTCCGATT 1437
Query 1437 ATGATAGAACCTTACTACGGTGGGGCAGCCCGGGAACACGGGTTCTTTTTCCCACTACTG 1496
|||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| ||
Sbjct 1438 ATGATAGAGCCTTACTACGGTGGGGCAGCCCGGGAACACAGCTTCTTCTTCCCACTAGTG 1497
Query 1497 ATGGTGGCAGCCATCGCAGTCTCTATTTTTTGATGGTTTCTTCTTGTCAATTTGTAATTC 1556
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATCGCGGCAGCCATCGCAGTCTCTATTTTTTGATGGTTTCTTCTTGTCAATTTGTAATTC 1557
Query 1557 TGTGTGATGGCTTGAACTAtttttttt-tC-TTCTT---GAATTCTGATTTCTCTTCCTT 1611
|||||||||||||||||| |||||||| | || || |||||||||||||||||||
Sbjct 1558 TGTGTGATGGCTTGAACTCTTTTTTTTATTATTTTTTTTGAATTCTGATTTCTCTTCCCC 1617
Query 1612 AGACCAAGTGATTATTAGAGCTGTTTTCTGGGACCAAACTGACCTTAAAACAATGCCAT 1670
||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||
Sbjct 1618 AGACCAAGTGATTATTAGAGCAATTTCCAGGGAACAAACTGACCTTAAAACAATGCCAT 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5